BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491276
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33970.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2344 0.0
AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 876 0.0
> AT4G33970.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:16279795-16281894 REVERSE LENGTH=2100
Length=2100
Score = 2344 bits (1269), Expect = 0.0
Identities = 1767/2000 (88%), Gaps = 64/2000 (3%)
Strand=Plus/Plus
Query 1 ATGCCCTTCTATAAGCAGCCTTGGGCCTTTTCCAAGGTTTTTGTTTTAGCCATGGCTAAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCTTCTATAAGCAGCCTTGGGTCTTTTCCAAGGTTTTTGTTTTAGCCATGGCTAAA 60
Query 61 CCTCCGTCCTTTGGCTGCTGcttcttcctcttattcttctccttcttatcttcttccttT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCGTCCTTTGGCTGCTGCTTCTTCCTCTTATTCTTCTCCTTCTTATCTTCTTCCTTT 120
Query 121 GTCTCATTTGCCCTAACCGATACAGAAGCTGCCTTCATTGTTCAGCGACAGCTCTTAACC 180
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 121 GTCTCATTTGCCCTAACCGATACAGAAGCTGCCTTCATTGTGCAGCGACAACTTTTAACG 180
Query 181 TTACCAGACAACGGCGAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCTACA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTACCAGACAACGGCGAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCTACC 240
Query 241 TTTGCCAACACCAGGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGCCAACACCAGGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATA 300
Query 301 TTTTCAGACCCATTTAACACCACGGGGAACTGGCATGGCCCGCACGTGTGCAGCTACACC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 301 TTTTCAGACCCATTTAACACCACGGGGAACTGGCATGGCCCACACGTGTGCGGCTACACC 360
Query 361 GGTGTGGTTTGTGCGCCGGCTCTTGATGATTCCGATGTCACAGTTGTAGCTGGTGTTGAC 420
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGTGTGGTTTGTGCGCCAGCTCTTGATGATTCCGATGTCACGGTTGTAGCTGGTGTTGAC 420
Query 421 CTCAACGGTGCGGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACGGATGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTCAACGGTGCGGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACAGATGTT 480
Query 481 GCTATGTTCCATTTGAATTCAAACCGGTTTTGCGGGATCATACCTAAAAGCTTTGAGAAG 540
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GCAATGTTCCATTTGAATTCAAACCGGTTTTGTGGGATCATACCTAAAAGCTTTGAGAAG 540
Query 541 CTGAAGCTAATGCACGAATTCGATGTTAGTAACAACCGTTTCGTTGGACCTTTCCCTAAA 600
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAAAGCTAATGCACGAATTCGATGTTAGTAACAACCGTTTCGTTGGACCTTTCCCTAAC 600
Query 601 GTCGTCCTTTCTTGGCCTAATGTCAAATACATT-GACCTTAGGTTCAACGATTTCGAAGG 659
||||| || ||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 601 GTCGTTCTCTCTTGGCCTGATGTCAAATAC-TTCGACCTTAGGTTCAACGATTTCGAAGG 659
Query 660 TCAAGTCCCTCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAAGTCCCTCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAG 719
Query 720 ATTCACCTCGGTGATTCCTGAATCTCTAGGGGAATCTCCGGCCTCGGTTGTGACTTTTGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTCACCTCGGTGATTCCTGAATCTCTAGGGGAATCTCCGGCCTCGGTTGTGACTTTTGC 779
Query 780 TAACAATAAATTCACCGGATGTATCCCTAAGAGTATCGGAAACATGAAGAATCTCAACGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAACAATAAATTCACCGGATGTATCCCTAAGAGTATCGGAAACATGAAGAATCTCAACGA 839
Query 840 GATTGTCTTTATGGACAATGATTTGGGAGGTTGTTTCCCATCTGAAATTGGGAAGTTATC 899
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 840 GATTGTCTTTATGGACAATGATTTAGGAGGTTGTTTCCCATCTGAAATCGGAAAGTTATC 899
Query 900 TAATGTAACGGTTTTCGATGCAAGCAAGAACTCGTTTATAGGTCGTCTCCCGACTAGTTT 959
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 900 GAATGTAACGGTTTTCGATGCAAGCAAGAACTCGTTCATAGGTCGTCTCCCGACTAGCTT 959
Query 960 TGTCGGGTTAACGAGTGTGGAGGAATTTGATATCTCCGGGAACAAACTCACCGGACTTGT 1019
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 TGTCGGGTTAACGAGCGTGGAGGAAATTGATATCTCCGGGAACAAACTCACCGGACTTGT 1019
Query 1020 ACCGGATAACATTTGCAACTTGCCTAATTTGGTGAACTTCACTTACTCCTACAATTACTT 1079
|||| ||||||||||| | |||||||||||||||||||| ||||| || |||||||||||
Sbjct 1020 ACCGCATAACATTTGCCAGTTGCCTAATTTGGTGAACTTGACTTATTCTTACAATTACTT 1079
Query 1080 CAATGGACAAGGTGGTTCGTGTGTTCCAGGTGGTGGTCGCAAGGAGGTTGCATTGGACGA 1139
|| ||||||||| ||||| ||||||||||||||| ||||||||||| |||| ||||| ||
Sbjct 1080 CAGTGGACAAGGAGGTTCTTGTGTTCCAGGTGGTAGTCGCAAGGAGATTGCGTTGGATGA 1139
Query 1140 CACACGTAATTGCTTGCCTGCTCGACCTGACCAACGATCCTCCCAAGAATGTGCGGTTGT 1199
|||||| ||||||||| || |||||||||| ||||||||| |||||||||||||||||||
Sbjct 1140 CACACGCAATTGCTTGGCTTCTCGACCTGAGCAACGATCCGCCCAAGAATGTGCGGTTGT 1199
Query 1200 GATCAACCGCCCGGTTGATTGTAGCAAGGATAAGTGCGCTGGTGGCGGAGGTGGTGGCTC 1259
|||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 1200 GATCAACCGCCCGGTTGATTGTAGCAAGGACAAGTGCGCTGGTGGC-----T-----CT- 1248
Query 1260 ATCTACTCCATCGAAACCATCACCGGTTCACAAACCAACGCCAGTTCCAACTACGCCGGT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 -TCTACTCCATCGAAACCATCACCGGTTCACAAACCAACGCCAGTTCCAACTACGCCGGT 1307
Query 1320 TCCCAAACCAACGCCAGTTCCTACTACGCCGGTTCACAAACCATCGCCAGTACCAACTAC 1379
|| ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1308 TCACAAACCAACACCAGTTCCAACTACGCCGGTTCAAAAACCATCGCCAGTTCCAACTAC 1367
Query 1380 GCCCGTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCATCGCCA-TTCC 1438
|| ||||| |||||| ||||||||||||| || || |||||| ||||||||||| ||
Sbjct 1368 ACCGGTTCAAAAACCATCGCCAGTTCCAACAACCCCTGTTCACGAACCATCGCCAGTTTT 1427
Query 1439 AACTACGCCCGTTGACAAACCATCGCCAATTCCAACTCCGCCAGTTCCATCTCGGCCGTG 1498
| ||||||| |||||||||||||||||| ||||| ||| ||| |||| | | |
Sbjct 1428 AGCTACGCCGGTTGACAAACCATCGCCAGTTCCATCTCGGCCGGTTCAAAAACCACAACC 1487
Query 1499 ACGAACAG-GCGCAGCCCTCCTCCACCTCATCAATT-C---CAACCTCCGGTGTCCACTC 1553
|| || || | || || || ||| | ||| || | ||| |||| ||| | |
Sbjct 1488 ACCAAAAGAGT-CA-CC-TCAACCAGATGATCC-TTACGATCAATCTCCAGTGACGAAAA 1543
Query 1554 TCCTCCA-CCG-CCACCGCCT--GTTCA-CTCTCCTCCACCGCCTGTCTTT-Tcgccacc 1607
| | | || || ||| || | ||| |||||| ||||| || || || || |||||
Sbjct 1544 GGCGC-AGCCCTCCTCCGGCTCCGGTCAACTCTCCACCACCACCAGT-TTACTCCCCACC 1601
Query 1608 gccaccgcctgtccactcacctccac-cgccaccacctccagtctactctccaccgccac 1666
|| || ||| |||| | | | ||| | || || || |||||| ||||||| || ||||
Sbjct 1602 ACCTCCTCCT--CCAC-C-CGTTCACTCTCCCCCGCCGCCAGTCCACTCTCCTCCACCAC 1657
Query 1667 cacc--tccaGTAAATTCC-CC---ACCGCCACCTGTTCAATCACCGCCACCCCCAGTCC 1720
|||| | | | ||| || ||| |||||||| || || || ||||| || |||
Sbjct 1658 CACCGGTGTATTCGCCTCCGCCCCCACCCCCACCTGTCCACTCTCCTCCACCGCCTGTCT 1717
Query 1721 ATTCGCCACCACCCCCTCCGGT-TCACTCACCGCCGCCACCGGTTCATTCCCCGCCGCCA 1779
||| |||||||| ||| || | | || ||||| || || || || || ||||| ||
Sbjct 1718 TTTCACCACCACC---TCCAGTCT-ATTCCCCGCCTCCCCCAGTCCACTCACCGCCTCCC 1773
Query 1780 CCAGCACCTGTTCATTcaccgccgccacca---gtacactcgccaccaccaccggc-cag 1835
|||| || ||| | ||||||||| || || ||||| || || ||||||| ||
Sbjct 1774 CCAGT-CCA-TTCGC-CGCCGCCGCCAGCACCTGTTCACTCACCGCCTCCACCGGTTCA- 1829
Query 1836 ttcaccaccacaaacaccac-tcgaaccat-caccaTCC-CCAACGATCTTTTCTCCACC 1892
||| || || | | |||||| | | || |||| || ||| || |||||||||||||
Sbjct 1830 TTCCCCCCCGCCACCACCACCT-GTTT-ATTCACCG-CCACCACCGGTCTTTTCTCCACC 1886
Query 1893 GCCGTCGCAATTTCCACCAGTAGTCTACTCTCCTCCGCCAAGACCGCCCAAGATCAACTC 1952
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 GCCGTCGCAATCTCCACCAGTAGTCTACTCTCCTCCGCCAAGACCGCCCAAGATCAACTC 1946
Query 1953 CCCACCGGCTC-AAGCACCA 1971
|||||| | || || |||||
Sbjct 1947 CCCACCAG-TCCAATCACCA 1965
Score = 134 bits (72), Expect = 4e-30
Identities = 93/103 (90%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 1384 GTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCATCGCCA-TTCCAACT 1442
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1273 GTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCAACACCAGTTCCAACT 1332
Query 1443 ACGCCCGTTGACAAACCATCGCCAATTCCAACTCCGCCAGTTC 1485
||||| ||| | |||||||||||| |||||||| | || ||||
Sbjct 1333 ACGCCGGTTCAAAAACCATCGCCAGTTCCAACTACACCGGTTC 1375
> AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:6918039-6920319 REVERSE LENGTH=2184
Length=2184
Score = 876 bits (474), Expect = 0.0
Identities = 918/1129 (81%), Gaps = 43/1129 (4%)
Strand=Plus/Plus
Query 136 ACCGATACAGAAGCTGCCTTCATTGTTCAGCGACAGCTCTTAACCTTACCAGACAACGGC 195
|||||| |||||| | | || |||| |||||||||||||| || ||||| || || ||
Sbjct 58 ACCGATGCAGAAGTTTCATTTATTGCACAGCGACAGCTCTTGACGTTACCTGAAAATGGT 117
Query 196 GAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCT-ACATTTGCCAACACC-- 252
||||||||||||||||| || || ||||||||||| |||| | ||||||| ||| |||
Sbjct 118 GAACTTCCTGATGATATTGAGTATGAGGTTGATCTTAAGG-TGACATTTG-CAA-ACCAT 174
Query 253 AGGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATATTTTCAGACCCA 312
|||||||||||||| ||||| ||||| || || ||||||||||| | | |||||||||
Sbjct 175 AGGCTTAAGAGAGCGTATATTGCTCTCCAAGCCTGGAAAAAGGCGGTGTATTCAGACCCG 234
Query 313 TTTAACACCACGGGGAACTGGCATGGCCCGCACGTGTGCAGCTACACCGGTGTGGTT-TG 371
||||||||||| || |||||||||||||| || ||||| |||| || ||||| ||| ||
Sbjct 235 TTTAACACCACAGGAAACTGGCATGGCCCTCATGTGTGTGGCTATACGGGTGT-GTTCTG 293
Query 372 TGCGCCGGCTCTTGATGATTCC-GATGTCACAGTTGTAGCTGGTGTTGACCTCAACGGTG 430
||| |||||||||||||| ||| || ||| | ||||| || || ||||| | || ||||
Sbjct 294 TGCCCCGGCTCTTGATGA-TCCTGACGTCGCGGTTGTGGCGGGGGTTGATTTGAATGGTG 352
Query 431 CGGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACGGATGTTGCTATGTTCC 490
||||||||||||||||||| || ||||| |||||||||||||| |||||||| ||||| |
Sbjct 353 CGGATATCGCAGGGCATTTACCGGCTGAACTTGGTTTGATGACAGATGTTGCGATGTTTC 412
Query 491 ATTTGAATTCAAACCGGTTTTGCGGGATCATACCTAAAAGCTTT-GAGAAGCTGAAG-CT 548
||||||||||||||||||| || || ||||||||||| || ||| |||||| || || ||
Sbjct 413 ATTTGAATTCAAACCGGTTCTGTGGTATCATACCTAAGAG-TTTCGAGAAGTTG-AGCCT 470
Query 549 AATGCACGAATTCGATGTTAGTAACAACC-GTTTCGTTGGACCTTTCCCTAAAGTCGTCC 607
||||||||| || ||||| || ||||||| |||| || |||||||||||| || ||||
Sbjct 471 AATGCACGAGTTTGATGTCAGCAACAACCGGTTT-GTCGGACCTTTCCCTTCTGTTGTCC 529
Query 608 TTTCTTGGCCTAATGTCAAATACATTGACCTTAGGTTCAACGATTTCGAAGGTCAAGTCC 667
| || ||||| ||| || | ||||||| | || | ||| |||||||||||||||||||
Sbjct 530 TCTCGTGGCCGGCTGTTAAGTTCATTGACGTCAGATACAATGATTTCGAAGGTCAAGTCC 589
Query 668 CTCCTGAGCTTTTCAAGAAAGAA-CTTGACGCCATTTTCTTGAACGACAATAGATTCACC 726
|||||||||||||||| |||| | || |||||||||||| ||||| |||| ||||||||
Sbjct 590 CTCCTGAGCTTTTCAA-AAAGGATCTCGACGCCATTTTCCTGAACAACAACAGATTCACG 648
Query 727 TCGGTGATTCCTGAATCTCTAGGGGAATC-TCCGGCCTCGGTTGTGACTTTTGCTAACAA 785
|| |||||||| || || || ||||| || | |||| |||||||| |||||| ||||
Sbjct 649 TCTACCATTCCTGATTCCCTCGGAGAATCATCAG-CCTCCGTTGTGACCTTTGCTCACAA 707
Query 786 TAAATTCACCGGATGTATCCCTAAGA-GTATCGGAAACATGAAGAATCTCAACGAGATTG 844
||||| | ||| |||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 708 CAAATTTAGCGGTTGTATCCCTA-GAAGTATTGGAAACATGAAGAATCTCAACGAGATTA 766
Query 845 TCTTTATGGACAAT-GAT-TTGGGAGGTTGTTTCCCATCTGAAATTGGGAAGTTATCTAA 902
|||||| |||||| | | |||| ||||||||||| || || ||||||||| || | ||
Sbjct 767 TCTTTAAGGACAACAG-TCTTGGC-GGTTGTTTCCCGTCAGAGATTGGGAAGCTAGCCAA 824
Query 903 TGT-AACG-GTTTTCGATGCAAGCAAGAACTCGTTTA-TAGGTCGT-CTCCCGACTAGTT 958
||| |||| |||| || || |||| |||||| || | | ||| || || || | || |
Sbjct 825 TGTGAACGTGTTT--GACGCTAGCATGAACTCCTTCACT-GGT-GTTCTACCTCCAAGCT 880
Query 959 TTGTCGGG-TTAACGAGTGTGGAGGAATTTGATATCTCCGGGAACAAACTCACCGGACTT 1017
|||||||| ||| | ||| |||| || ||||||||||| ||||| ||||||||||| ||
Sbjct 881 TTGTCGGGCTTACC-AGTATGGAAGAGTTTGATATCTCTGGGAATAAACTCACCGGG-TT 938
Query 1018 G-TACCGGATAACATTTGCAACTTGCCTAATTTGGTGAACTTCACTTACTCCTACAATTA 1076
|||| || || || ||||| |||||||| ||||| ||||| || ||| ||||||||||
Sbjct 939 CATACCAGAGAATATATGCAAGTTGCCTAAATTGGTTAACTTGACGTACGCCTACAATTA 998
Query 1077 CTTCAATGGACAAGGTGGTTCGTGTGTTCCAGGTGGTGGTCGCAAGGAGGTTGCATTGGA 1136
|||||| |||||||||| ||| |||||||||||| || | ||| || ||||||||||
Sbjct 999 CTTCAACGGACAAGGTGATTCATGTGTTCCAGGTAGTCA--G-AAGCAGATTGCATTGGA 1055
Query 1137 CGACACACGTAATTGCTTGCCTGCTCGACCTGACCAACGATCCTCCCAAG-AATGTGCGG 1195
|| ||||| || |||||||| | ||| ||| | |||||||| || ||| ||||||| |
Sbjct 1056 TGATACACGCAACTGCTTGCCAGATCGGCCTAAGCAACGATCGGCC-AAGGAATGTGCTG 1114
Query 1196 TTGTGATCAACCGCCCGGTTGATTGTAGCAAGGATAAGTGCGCTGGTGG 1244
| ||||| | ||| || ||||||||||| ||||| ||||| ||||||||
Sbjct 1115 TGGTGATTAGCCGTCCAGTTGATTGTAGTAAGGACAAGTGTGCTGGTGG 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5