BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491280
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33950.1 | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOS... 1984 0.0
> AT4G33950.1 | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1
| Protein kinase superfamily protein | chr4:16272253-16274810
FORWARD LENGTH=1353
Length=1353
Score = 1984 bits (1074), Expect = 0.0
Identities = 1210/1271 (95%), Gaps = 27/1271 (2%)
Strand=Plus/Plus
Query 1 AGAGACAGAGGAAAGA--GGTAAAAAATGGATCGACCAGCAGTGAGTGGTCCTATGGATT 58
|||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 86 AGAGACAGAGGAAAGAGGGGGAGAAAATGGATCGACCAGCAGTGAGTGGTCCAATGGATT 145
Query 59 TGCCGATTATGCACGATAGCGATAGGTATGAGCTCGTCAAGGATATTGGCTCCGGTAATT 118
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 TGCCGATTATGCACGATAGTGATAGGTATGAACTCGTCAAGGATATTGGCTCCGGTAATT 205
Query 119 TTGGAGTTGCGAGATTGATGAGAGACAAGCAAAGTAATGAGCTTGTTGCTGTTAAATATA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TTGGAGTTGCGAGATTGATGAGAGACAAGCAAAGTAATGAGCTTGTTGCTGTTAAATATA 265
Query 179 TCGAGAGAGGTGAGAAGATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TCGAGAGAGGTGAGAAGATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCT 325
Query 239 TAAGACATCCCAATATCG-TACGATTCAAAGAGGTCATATTAACACCATCCCATTTAGCC 297
|||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct 326 TAAGACATCCCAATATCGTTA-GATTCAAAGAGGTTATATTAACACCAACCCATTTAGCC 384
Query 298 ATTGTTATGGAATATGCATCTGGAGGAGAACTTTTCGAGCGAATCTGCAATGCAGGCCGC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATTGTTATGGAATATGCATCTGGAGGAGAACTTTTCGAGCGAATCTGCAATGCAGGCCGC 444
Query 358 TTCAGCGAAGACGAGGCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTCAGCGAAGACGAGGCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGT 504
Query 418 CATGCTATGCAAGTATGTCACCGAGACTTAAAGCTCGAGAATACGTTATTAGATGGTAGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CATGCTATGCAAGTATGTCACCGAGACTTAAAGCTCGAGAATACGTTATTAGATGGTAGC 564
Query 478 CCGGCCCCTCGTCTAAAGATTTGTGATTTCGGATATTCTAAGTCATCAGTCTTACATTCG 537
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 565 CCGGCCCCTCGTCTAAAGATATGTGATTTCGGATATTCTAAGTCATCAGTGTTACATTCG 624
Query 538 CAGCCAAAATCAACTGTTGGAACTCCTGCATATATCGCTCCCGAGGTTTTACTAAAGAAA 597
|| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 625 CAACCAAAATCAACTGTTGGAACTCCTGCTTACATCGCTCCTGAGGTTTTACTAAAGAAA 684
Query 598 GAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGGGTTACTCTGTACGTCATGCTG 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 685 GAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGGGTTACTCTGTATGTCATGCTG 744
Query 658 GTTGGAGCGTATCCTTTCGAAGATCCCGAGGAACCAAAGAATTTCAGGAAAACTATACAT 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTTGGAGCATATCCTTTCGAAGATCCCGAGGAACCAAAGAATTTCAGGAAAACTATACAT 804
Query 718 AGAATCCTGAATGTTCAGTACGCTATTCCGGATTATGTTCACATATCTCCTGAATGTCGC 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 805 AGAATCCTGAATGTTCAGTATGCTATTCCGGATTATGTTCACATATCTCCTGAATGTCGC 864
Query 778 CATTTGATCTCAAGAATATTTGTCGCTGACCCTGCAAAGAGGATATCAATTCCTGAAATA 837
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 865 CATTTGATCTCCAGAATATTTGTTGCTGACCCTGCAAAGAGGATATCAATTCCTGAAATA 924
Query 838 AGTAACCACGAATGGTTTCTGAAGAATCTACCGGCAGATTTAATGAACGATAACACGATG 897
|| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 925 AGGAACCATGAATGGTTTCTAAAGAATCTACCGGCAGATCTAATGAACGATAACACGATG 984
Query 898 AACAGTCAGTTTGATGAATCGGATCAACCGGGCCAAAGCATAGAAGAGATCATGCAGATC 957
| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 985 ACCACTCAGTTTGATGAATCGGATCAACCGGGCCAAAGCATAGAAGAAATTATGCAGATC 1044
Query 958 ATTGCAGAAGCGACTGTTCCTCCTGTAGGCACTCAGAATCTGAACCATTATCTCACAGGA 1017
||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1045 ATTGCAGAAGCAACTGTTCCTCCTGCAGGCACTCAGAATCTGAACCATTACCTCACAGGA 1104
Query 1018 AGCTTGGACATAGATGACGATATGGAGGAAGACCTAGAGAGCGACCTTGATGATCTTGAC 1077
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1105 AGCTTGGACATAGATGACGATATGGAGGAAGACTTAGAGAGCGACCTTGATGATCTTGAC 1164
Query 1078 ATTGACAGTAGCGGAGAGATTGTGTACGCAATGTGATACTATCT--CTAT--G---G-TT 1129
|| ||||||||||||||||||||||||||||||||||||||| | |||| | | ||
Sbjct 1165 ATCGACAGTAGCGGAGAGATTGTGTACGCAATGTGATACTATATATCTATTTGCATGGTT 1224
Query 1130 TCTGCTACAAAAATGTCCaaa-aaaaaa-GTTGAAGAAGAATGAAGAATAACTGAATAAG 1187
||||||||||||||||| ||| |||||| ||||||||| | |||| ||| || | |
Sbjct 1225 TCTGCTACAAAAATGTC-AAACAAAAAATGTTGAAGAA---T-AAGATTAA--GA-T--G 1274
Query 1188 ATATCTTGCTTGCTATTGAGTTGGCCCAACTTTGTCTCAATGGGTACACTTTGAATCTTT 1247
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1275 -T-T-TTGCTTGCTATTGAGTTGGCCCAACTTTGTCTCAATGAGTACACTTTGAATCTTT 1331
Query 1248 GATATGCAAAA 1258
|||||||||||
Sbjct 1332 GATATGCAAAA 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5