BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491284
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33930.1 | Symbols: | Cupredoxin superfamily protein | chr4... 828 0.0
AT4G34300.1 | Symbols: | Cupredoxin superfamily protein | chr4... 800 0.0
> AT4G33930.1 | Symbols: | Cupredoxin superfamily protein | chr4:16264389-16265420
REVERSE LENGTH=1032
Length=1032
Score = 828 bits (448), Expect = 0.0
Identities = 648/739 (88%), Gaps = 35/739 (5%)
Strand=Plus/Plus
Query 259 AGCTCTGGCTC-ACACCATTCAAGCGGCACTGGCTCTACACACAACCGTCATA--GCT-C 314
||||||||||| | | |||||||| | ||||||||||||||||||| |||| | || |
Sbjct 313 AGCTCTGGCTCGA-ATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTAC 371
Query 315 TGGCACGAACCATTCAAGCGGCACTGGCTCT--TCAC-AC---AAC-GCTCTGGCTCTAA 367
|||| |||||||||||||||||| ||||||| ||| || || |||||||||| ||
Sbjct 372 TGGCTCGAACCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTCTGGCTCAAA 431
Query 368 CCACTCAAGCGGCACTGGCTCTTCACACAACAGTC-A-TAGCTCGGGCTCAAACCACTCG 425
|||||||||| ||||||| | ||| | | || || | ||| | ||||| | || |
Sbjct 432 CCACTCAAGCAGCACTGG--C-TCA-A-ACCACTCAAGCAGCACTGGCTC-TA-CA--C- 481
Query 426 AGCATCGTTGAATCACAGCTCTGGCTCAAACCACTCAAACAT-CGTTGGTTCTACATACA 484
| | | |||||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 482 A-TAAC----AATCACAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCTACACACA 535
Query 485 ACG-GTCACAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTCTACACACAACAATCAC 543
| | |||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||
Sbjct 536 A-GAATCACAGCTCTGGCTCAAATCACTCAAGCATCGTTGGTTCTACACACAACAATCAC 594
Query 544 AGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAACCACACGAATCCAATA 603
|||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||
Sbjct 595 AGCTCTGGCTCAAACCACTCCAGCATCACTGGCTCTACACACAACCACACGGCTCCAATA 654
Query 604 CCGGCTGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATGG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CCGGCTGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATGG 714
Query 664 AGTTCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAATGAT 723
| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 715 ACAGCAAAGCATGCCCCATTCTACGTCAGCGATGTTCTTGTTTTCAAGTACAACAACGAT 774
Query 724 GATCGAACACAATCCATGACGAAGCACCATAGCAAGAAGAAGAACGACGTCTACTTGCTC 783
|||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 775 GATCAAACCCAATCCAAGACGAAGCACCGTAACAAGAAGAAGAACGACGTCTACTTGCTC 834
Query 784 CCAGACATGAAGAGCTTCAAGAGATGCGATGTGGCCAGAGGCAAGAAGCTGGTGGCACGA 843
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 835 CCAGACATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAGGCAAGAAGCTGGTTGCACGA 894
Query 844 GGAGGTTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTAAGGTTCAGACTTACTACTTC 903
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 GGAGGTTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTAAGGTTCAGACTTACTACTTC 954
Query 904 GTCAGTGGAGACCATATAGGC-TGCAACCACAACATGAAGTTCTCTATCCACCCGATTCC 962
| |||||||||||| | | | ||||||||||||||||| |||||| ||||||| |||||
Sbjct 955 GCCAGTGGAGACCACA-ACGAATGCAACCACAACATGAAATTCTCTGTCCACCCCATTCC 1013
Query 963 CCACCCTTCTTCACATTAA 981
|| |||||||||||| |||
Sbjct 1014 CCGCCCTTCTTCACACTAA 1032
Score = 684 bits (370), Expect = 0.0
Identities = 528/600 (88%), Gaps = 27/600 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTATTG-GGCACGTAAGTTACTCGTAGTCCTCCTGGTTACTGCGTTCGTCTT 59
|||| ||| ||||| || ||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 4 ATGGTTCTTTATTGTGG-ACGTAAGTTACTCGTCGTCCTCATGGTTACTGCGTTCGTGTT 62
Query 60 CTCCGGGAGTGCTGAAGCGTGGAGCTGGAGTTGGGGTTCTGACCAATCTGGTTCGAACGG 119
|||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 63 CTCCGGGAGTGCTGAAGCATGGAGCTGGAGTTGGGGTTCTGGCCAGTCCGGTTCGAACGG 122
Query 120 GGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGGTTGGGGATGGAGATCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 182
Query 180 AGACTCCAACTCGGATGGTTCAAGTTGGGGTTGGGGATGGAGCTCCGACGGAACAGATAC 239
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 183 AGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCCGACGGAACAGATAC 242
Query 240 AAACTGGGGTTGGGGAAGGAGCTCTGGCTCACACCATTCAAGCGGCACTGGCTCTACACA 299
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 243 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACA 302
Query 300 CAACCGTCATAGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACACAACG--C- 356
|||| |||| ||||||||| |||| |||||||| | |||||||||| ||||||||| |
Sbjct 303 CAACGGTCACAGCTCTGGCTCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCA 362
Query 357 ----TCT---GGCTCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTC 409
||| ||||| ||||| |||||||||| ||||||| ||||||| || | |||||
Sbjct 363 CACCTCTACTGGCTCGAACCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTC 422
Query 410 GGGCTCAAACCACTCGAGCATCGTTGAATCACAGCTCTGGCTCAAACCACTCAAACATCG 469
|||||||||||||| |||| | ||| | |||||||||||||||| || |
Sbjct 423 TGGCTCAAACCACTCAAGCA--G------CAC---T--GGCTCAAACCACTCAAGCAGCA 469
Query 470 TTGGTTCTACATACAACGGTCACAGCTCTGGCTTAAACCACTCGAGCAT-CATTGGTTCT 528
||| |||||| | ||| |||||||||||||| ||||||||| ||||| | ||||||||
Sbjct 470 CTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCT 528
Query 529 ACACACAACAATCACAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAAC 588
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 ACACACAAGAATCACAGCTCTGGCTCAAATCACTCAAGCATCGTTGGTTCTACACACAAC 588
Score = 134 bits (72), Expect = 2e-30
Identities = 226/294 (77%), Gaps = 35/294 (12%)
Strand=Plus/Plus
Query 310 AGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACAC-A-----AC-GCTCTGGC 362
||||||||| | |||||||||||||||||||| ||| ||||| | || ||||||||
Sbjct 262 AGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGC 321
Query 363 TCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATA--GCT-CGGGCTCAAAC 419
|| || || ||||| | |||||||||| |||||||| |||| | || | ||||| |||
Sbjct 322 TCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTACTGGCTCGAAC 381
Query 420 CACTCGAGCATCGTTG-AATCACAGCTCT-GGCTCAAACCACTCAAACATCGT-TGGTTC 476
|| || | | || | ||| ||||| | | | || | | ||| | | ||| |
Sbjct 382 CATTC-A--AGCG--GCAAT---GGCTCTAGACAC-AA-CGGT--TACAGC-TCTGG--C 426
Query 477 TACATACAACGGTC-A-CAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTCTACACAC 534
| || || || || | |||| |||||| ||||||||| |||| || ||| ||||||||
Sbjct 427 T-CAAACCAC--TCAAGCAGCACTGGCTCAAACCACTCAAGCAGCACTGGCTCTACACAT 483
Query 535 AACAATCACAGCTCTGGCTCAAACCACTCAAGCAT-CGTTGGTTCTACACACAA 587
||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 484 AACAATCACAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCTACACACAA 536
> AT4G34300.1 | Symbols: | Cupredoxin superfamily protein | chr4:16412773-16413714
FORWARD LENGTH=942
Length=942
Score = 800 bits (433), Expect = 0.0
Identities = 616/699 (88%), Gaps = 33/699 (5%)
Strand=Plus/Plus
Query 310 AGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACAC-A-----AC-GCTCTGGC 362
||||||||| | |||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 250 AGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGGC 309
Query 363 TCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGGGCTCAAACCAC 422
|| ||||| |||||||||||||| ||| |||||||| |||| ||||| ||||| ||||||
Sbjct 310 TCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGCTCGAACCAC 369
Query 423 TC--G-AGCA-T--C-GT-----T--GAATCACAGCTCTGGCTCAAACCACTCAAACATC 468
|| | |||| | | | | |||||||||||||||||||||||||||| |||
Sbjct 370 TCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCATA 429
Query 469 GTTGGTTCTACATACAACG-GTCACAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTC 527
|||||||||||| |||| | |||| ||||||||| ||||||||| ||||| |||| |
Sbjct 430 GTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCATTGCTGGTCC 488
Query 528 TACACACAACAATCACAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAA 587
||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 489 TACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTGGTTCTACACACAA 548
Query 588 CCACACGAATCCAATACCGGCT-GGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 646
|||||| ||| || | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 549 TCACACGGCTCC-AT--C-GCTGGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 604
Query 647 ACGGTTACACAGAATGGAGTTCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 706
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 605 ACGGTTACACAGAATGGACTGCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 664
Query 707 TCACGTACAACAATGATGATCGAACACAATCCATGACGAAGCACCA-TA-G-CAAGAAGA 763
||||||||||||| |||| | ||||||||||| |||||||||||| | | ||||||||
Sbjct 665 TCACGTACAACAACAATGACCAAACACAATCCAAGACGAAGCACCACCATGACAAGAAGA 724
Query 764 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCGATGTGGCCAGAG 823
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 725 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAG 784
Query 824 GCAAGAAGCTGGTGGCACGAGGAGGTTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTA 883
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 GCAAGAAGCTGGTTGCACGAGGAGGTTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTA 844
Query 884 AGGTTCAGACTTACTACTTCGTCAGTGGAGACCATATAGG-CTGCAACCACAACATGAAG 942
||||||| ||||| |||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 845 AGGTTCATACTTATTACTTCGTCAGTGGAGACCACA-ACGACTGCAACCACAACATGAAG 903
Query 943 TTCTCTATCCACCCGATTCCCCACCCTTCTTCACATTAA 981
|||||| ||||||||||||||||||||||||| || |||
Sbjct 904 TTCTCTGTCCACCCGATTCCCCACCCTTCTTCGCACTAA 942
Score = 564 bits (305), Expect = 6e-160
Identities = 479/558 (86%), Gaps = 32/558 (6%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTATTG-GGCACGTAAGTTACTCGTAGTCCTCCTGGTTACTGCGTTCGTCTT 59
|||||||||| | |||||| ||| |||| ||| ||||| ||||||||| |||| ||||
Sbjct 1 ATGGGTCTCT-CAGCGGCACGCAAGCTACTTGTATTCCTCATGGTTACTGTGTTCCTCTT 59
Query 60 CTCCGGGAGTGCTGAAGCGTGGAGCTGGAGTTGGGGTTCTGACCAATCTGGTTCGAACGG 119
||| ||||||||||| ||||||||||||||||||||||| | ||| |||||||| |||||
Sbjct 60 CTCTGGGAGTGCTGACGCGTGGAGCTGGAGTTGGGGTTCCGGCCAGTCTGGTTCAAACGG 119
Query 120 GGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 179
|| ||||||||||| | |||||||||||||| |||||||||||| ||||||||
Sbjct 120 GGATTGGGGATGGA------G---CTCTGGCGGTTCTTTTGGCTCGGGTTCTGGTGGTTC 170
Query 180 AGACTCCAACTCGGATGGTTCAAGTTGGGGTTGGGGATGGAGCTCCGACGGAACAGATAC 239
|||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 171 AGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATAC 230
Query 240 AAACTGGGGTTGGGGAAGGAGCTCTGGCTCACACCATTCAAGCGGCACTGGCTCTACACA 299
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 231 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACA 290
Query 300 CAACCGTCATAGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACACAACG--C- 356
|||| |||| ||||||||| |||||||||||||||||||||| ||| ||||||||| |
Sbjct 291 CAACGGTCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCA 350
Query 357 ----TCTGGCTCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGGG 412
|||||||| |||||||||||| ||||||||||| |||| |||| ||| ||||| ||
Sbjct 351 CAGCTCTGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGG 410
Query 413 CTCAAACCACTCGAGCATCGTTG-----A-AT-CA-----CA-G-CTCTGGCTCAAACCA 458
|||||||||||| ||||| |||| | | || || | |||||||||||||||
Sbjct 411 CTCAAACCACTCAAGCATAGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACCA 470
Query 459 CTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTCTGGCTTAAACCACTCGAGCAT 518
||||| ||| | |||| |||| |||||||||||||||| |||| ||||||||| |||||
Sbjct 471 CTCAAGCATTGCTGGTCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCAT 530
Query 519 CATTGGTTCTACACACAA 536
||||||||||||||||||
Sbjct 531 CATTGGTTCTACACACAA 548
Score = 189 bits (102), Expect = 4e-47
Identities = 134/150 (89%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 438 TCACAGCTCTGGCTCAAACCACTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTC 497
||||||||||||||| ||||| |||| | | |||||||||| ||||||||||||||||
Sbjct 297 TCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTC 356
Query 498 TGGCTTAAACCACTCGAGCATCATTGGTTCTACACACAACAATCACAGCTCTGGCTCAAA 557
||||| |||||||| |||| || ||| |||||||| |||||||||||||||||||||||
Sbjct 357 TGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAA 416
Query 558 CCACTCAAGCATCGTTGGTTCTACACACAA 587
|||||||||||| |||||||||||||||||
Sbjct 417 CCACTCAAGCATAGTTGGTTCTACACACAA 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5