BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491285
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33925.1 | Symbols: | unknown protein; Has 30201 Blast hits... 917 0.0
> AT4G33925.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16263237-16264226
FORWARD LENGTH=616
Length=616
Score = 917 bits (496), Expect = 0.0
Identities = 544/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 2 ACGGAAGAAAAAGCAAAACGATGAGCGTCACTCTTTTGGTCGCAGACGCCGTTTGGTCGA 61
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 36 ACGGAAGAAAAAGCAAAACGATGAACGTCACTCTTTTGGTCGCAGACGCCGTTTGGTCGA 95
Query 62 ACATTGAATCAACCGGTTCAGTAACCGAAGAACAGCTCTCAATCTTGCATTTGTTGTTTG 121
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 96 ACATTGAATCAACCGGTTCAGTAACCGAAGAACAGCTCTCAATCTTGCAGCTGTTGTTTG 155
Query 122 GTAAGAATCTTGAGAAAGCCACCAGAATAATCGACAAGAGAGGTGTTAAGAAAATCTCTG 181
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 156 GTAAGAATCTTGAGAAAGCCACCAGAATAATCGACAAGAGAGGCGTCAAGAAAATATCTG 215
Query 182 GCTTACCCAGTGGAAGATCCATCTTTCAGGTTGTGGGAGAATCTCAGAAGAGAGAAGAGT 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 216 GCTTACCCAGTGGAAGATCCATCTTTCAGGTTGTGGGGGAATCTCAGAAGAGAGAAGAGT 275
Query 242 ATCTCTGTTTCCCAGGAGATTACTGTGGATGTTATTCTTTCTTCTATGATGTTGTTAGCA 301
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 276 ATCTCTGCTTCCCAGGAGATTACTGTGGATGTTATTCTTTCTTCTATGATGTTGTAAGCA 335
Query 302 GAGGAGAGCACCAATGTTGTAAACATCAATTGGCTGCGAGGTTGGCTTCTTCTTTGGGTA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GAGGAGAGCACCAATGTTGTAAACATCAATTGGCTGCGAGGTTGGCTTCTTCTTTGGGTA 395
Query 362 CATACAGTGGAATCGAGGTTTCAGATGACCATCTTGCCTTGATGCTCTCAAAGATCTGAA 421
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 396 CATACAACGAAATCGAGGTTTCTGATGACCATCTTGCCTTGATGCTCTCAAAGATCTGAA 455
Query 422 GCTTTCAATACAAGTACATGTCTTAGGCTATATA--TGCCAGTAACCTGGGAATGATCTG 479
||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 456 GCTTTCAATACAACTACATGTCTTAGGCT-TATAAGTGCCAGTAACCTGGGAATGATCTG 514
Query 480 TGTCTTTGAGAATTATGCGGATCAAGATTCTTCACATGTTTGATGAACAATGTTGCTTCG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TGTCTTTGAGAATTATATGGATCAAGATTCTTCACATGTTTGATGAACAATGTTGCTTCA 574
Query 540 TCTTCTCTGTTTAACTTGCTGTATATA 566
||| | ||||||||||||||||||||
Sbjct 575 CCTTTTATGTTTAACTTGCTGTATATA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5