BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491286
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33920.1 | Symbols: | Protein phosphatase 2C family protein... 2516 0.0
> AT4G33920.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:16260663-16262981 FORWARD LENGTH=1634
Length=1634
Score = 2516 bits (1362), Expect = 0.0
Identities = 1537/1618 (95%), Gaps = 26/1618 (2%)
Strand=Plus/Plus
Query 1 TCACGCGGtttttttttttCTTTATCCACCAACTCAACACACACACGAATCCCTTAAAAC 60
|||||||| |||| |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 2 TCACGCGG-TTTTCTTTTAC--CA-CCACCAACTCAACACACACACGAATCCCTTAAAAC 57
Query 61 CGATCAGATCAAACAAAAACGAACGAATCAAAATTCAATCAGAAGAAACCTTTCGATTTC 120
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 58 CGATCAGATCAAACAAAAACGAACGAATCAAAATTCAATAAAAAAAAACCTTTCGATTTC 117
Query 121 TCTCATCCAATCGAATCCG-AAATCTTGTTCATTTTGTTCTCTTTCTCTCT-ACTCCACT 178
|||||||||||||||| || |||||||||| | ||||||||||||| |||| |||
Sbjct 118 TCTCATCCAATCGAAT-CGAAAATCTTGTT-A------TCTCTTTCTCTCTAACTCTACT 169
Query 179 GCACTCAGAATCTTTCTGTATAGAAAAACCCTAAGTA-G--GTGATGTTGCGAGCTTTAG 235
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 170 GCACTCAGAATCTCTCTGTATAGAAAAACCCTAAGTAGGTTGTGATGTTGCGAGCTTTAG 229
Query 236 CACGGCCTCTCGAACGGTGTTTGGGAAGCAGAGCTAGTGGTGATGGTTTACTCTGGCAAT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CACGGCCTCTCGAACGGTGTTTGGGAAGCAGAGCTAGTGGTGATGGTTTACTCTGGCAAT 289
Query 296 CGGAATTGAGACCTCACGCCGGCGGTGATTATTCGATCGCGGTGGTTCAAGCCAATTCCA 355
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGGAATTGAGACCTCACGCTGGCGGTGATTATTCGATCGCGGTGGTTCAAGCCAATTCCA 349
Query 356 GGCTTGAAGATCAGAGCCAGGTTTTCACATCTTCTTCTGCTACTTACGTCGGCGTATACG 415
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 350 GGCTTGAAGATCAGAGTCAGGTTTTCACATCTTCTTCTGCTACTTACGTCGGTGTATACG 409
Query 416 ATGGTCATGGTGGACCTGAAGCTTCTAGATTCGTTAATAGACATCTCTTTCCTTATATGC 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 ATGGTCATGGTGGACCTGAAGCTTCTAGATTCGTTAACAGACATCTCTTTCCTTATATGC 469
Query 476 ACAAATTTGCAAGAGAACATGGGGGACTATCTGTAGATGTTATTAAAAAAGCATTCAAAG 535
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 470 ACAAATTTGCAAGAGAACATGGGGGATTATCTGTAGATGTTATCAAAAAGGCATTCAAAG 529
Query 536 AAACTGAAGAGGATTTTTGTGGTATGGTTAAACGATCACTTCCCATGAAACCGCAAATGG 595
|||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 530 AAACAGAAGAAGAGTTTTGTGGTATGGTTAAACGATCCCTTCCCATGAAACCGCAAATGG 589
Query 596 CTACTGTAGGATCTTGCTGTCTTGTTGGTGCAATCTCTAATGACACACTGTATGTTGCGA 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 590 CTACTGTAGGATCTTGCTGTCTTGTTGGTGCAATCTCTAATGACACACTGTATGTTGCTA 649
Query 656 ATCTTGGGGACTCGAGAGCCGTTCTTGGAAGCGTTGTTTCAGGGGATGATAGTAATAAGG 715
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 650 ATCTTGGGGACTCGAGAGCCGTTCTTGGAAGCGTTGTTTCAGGGGTTGATAGTAATAAAG 709
Query 716 GTGCCGTAGCTGAACGGTTATCTACTGATCATAATGTTGCTGTTGAAGAAGTGAGAAAGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GTGCCGTAGCTGAACGGTTATCTACTGATCATAATGTTGCTGTTGAAGAAGTGAGAAAGG 769
Query 776 AGGTTAAGGCACTTAACCCCGATGATTCACAAATCGTCATATACACACGTGGAGTTTGGC 835
||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 770 AGGTTAAGGCACTTAACCCTGATGACTCACAAATCGTCTTATACACACGTGGAGTTTGGC 829
Query 836 GGATCAAAGGCATTATTCAGGTATCGAGATCAATTGGGGATGTATACTTGAAAAAACCAG 895
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 GGATTAAAGGCATTATTCAGGTATCGAGATCAATTGGGGATGTATACTTGAAAAAACCGG 889
Query 896 AGTATTACAGGGACCCGATTTTCCAGCAACATGGAAATCCCATTCCTTTGAGGAGACCAG 955
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 890 AGTATTACAGGGACCCGATTTTCCAGCGACATGGAAATCCCATTCCTTTGAGGAGACCCG 949
Query 956 CGATGACAGCCGAACCCTCCATTATAGTAAGGAAGCTTAAGCCACAGGACTTGTTTCTGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CGATGACAGCCGAACCCTCCATTATAGTAAGGAAGCTTAAGCCACAGGACTTGTTTCTGA 1009
Query 1016 TATTTGCATCAGATGGTCTCTGGGAACATCTTAGTGATGAAACAGCCGTAGAAATCGTCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TATTTGCATCAGATGGTCTCTGGGAACATCTTAGTGATGAAACAGCCGTAGAAATCGTCC 1069
Query 1076 TCAAACACCCAAGAACTGGGATTGCACGAAGACTTGTAAGAGCAGCTCTAGAAGAAGCGG 1135
||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1070 TCAAACACCCAAGAACTGGTATTGCCCGAAGACTTGTAAGAGCTGCTCTGGAAGAAGCGG 1129
Query 1136 CAAAGAAGAGAGAAATGAGATATGGAGACATAAAGAAAATAGCCAAAGGAATTCGACGAC 1195
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1130 CAAAGAAGAGAGAAATGAGATATGGAGATATAAAGAAAATAGCCAAAGGAATTCGACGAC 1189
Query 1196 ATTTCCATGACGACATAAGCGTTGTTGTAGTTTATCTAGATCAAAAGAAAACCAGTTCAT 1255
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1190 ATTTCCATGACGACATAAGCGTTATTGTAGTTTATCTAGATCAAAACAAAACCAGTTCAT 1249
Query 1256 CGAATGGTAAATTGGTCCAGCAAGGAGGCATCACCGCTCCACCGGATATCTACTCGTTAC 1315
||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1250 CGAATAGTAAATTGGTGAAGCAAGGAGGTATCACCGCTCCACCGGATATCTACTCATTAC 1309
Query 1316 ACTCTGATGAAGCAGAGCAACGACGGTTACTGAATGTGTTATACTGACCCTTTGATGATG 1375
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1310 ACTCTGATGAAGCAGAGCAACGACGGTTACTCAATGTGTTATACTGACTGTTTGATTATG 1369
Query 1376 GTAAAATGGTTGATTGGGAAAGATCCGAATAGGGAGAAAACttgtttacatatttgttta 1435
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GTAAAATGGCTGCTTGGGAAAGATCCGAATAGGGAGAAAACTTGTTTACATATTTGTTTA 1429
Query 1436 tttgtttttctacgaagaattg-ttttattttattttattgAATAGTGGAGTTGGATTTG 1494
||||||||||||||||||| || |||| |||| |||| || |||| ||||||||||||||
Sbjct 1430 TTTGTTTTTCTACGAAGAACTGGTTTT-TTTT-TTTT-TTCAATATTGGAGTTGGATTTG 1486
Query 1495 TATATTCTTTTACCAGCAAAGAAGGTCGAAACCCTTTTCTTTTGGGGCAAAGCAGTTTTG 1554
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1487 TATATTCTTTTACCAGCAAAGAAGGTCGAAACCCTTTAGTTTTTGGGCAAAGCAGTTTTG 1546
Query 1555 CTTTTGACA-AA-CAATACTCTTGTAAGAAA-TCTAGTGTGAGAAACCGTTGAGGACA 1609
||||||||| || ||||||| ||||| |||| |||||||||| || ||||||||||||
Sbjct 1547 CTTTTGACACAAACAATACTTTTGTATGAAAATCTAGTGTGA-AA-CCGTTGAGGACA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79467462735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5