BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491287
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33910.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1578 0.0
> AT4G33910.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:16256733-16258771
REVERSE LENGTH=1234
Length=1234
Score = 1578 bits (854), Expect = 0.0
Identities = 910/937 (97%), Gaps = 4/937 (0%)
Strand=Plus/Plus
Query 49 TCGTTTACGCCGGCGAAGATTTCCATCGGAAACTTAATCTGATCGGACGGAAGAAGGCTC 108
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 97 TCGTTTACGCCGGCGAAGATTTCCATCGGAAACTTAATCTGATCGGAAGGAAGAAGGCTC 156
Query 109 GATGAAGAGCAGATTGAAGAGCTACAAGAGGAAGAAGCTAGGGTTAGCCACAGTCATCGT 168
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 157 GATGAAGAGCAGATTGAAGAGCTACAGGAGGAAGAAGCTAGGGTTAGCCACAGTTATCGT 216
Query 169 CTTCTGTTCTCTCTGTTTCCTCGTCGGTTTCTATGGTTCCACTCTACTTTCTCAGAGTGT 228
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 217 CTTCTGTTCTCTCTGTTTCCTCTTCGGTTTCTATGGCTCCACTCTACTTTCTCAGAATGT 276
Query 229 GCCTCGTGTTAAACCGAGGTTGAGAATGTTGGAGT-TGGTGGAGAATGGGGAAGAAGATA 287
||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||| |
Sbjct 277 GCCTCGTGTTAAACCCAGGTTGAGAATGTTGGA-TATGGTTGAGAATGGGGAAGAAGA-A 334
Query 288 -CTGGCTCGATGCCTCATGGTGTTACTGGAGAAGAATCCGTTGGATCAATTCCTTTTCAG 346
|| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 335 GCTAGCTCGATGCCTCATGGTGTTACTGGAGAAGAATCTATTGGATCGATTCCTTTTCAG 394
Query 347 GTACTTAGTTGGAGACCTAGGGCTATATATTTTCCGAATTTCGCAACTGGAGAACAATGC 406
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 395 GTACTTAGTTGGAGACCTAGGGCTATATATTTTCCGAATTTTGCAACTGCAGAACAATGC 454
Query 407 CAAGCTATTATTGAGAGAGCAAAGGTTAATCTGAAACCTTCTGCTTTGGCTCTCCGGAAA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CAAGCTATTATTGAGAGAGCAAAGGTTAATCTGAAACCTTCTGCTTTGGCTCTCCGGAAA 514
Query 467 GGAGAAACTGCTGAGAACACTAAGGGCACTAGAACAAGCTCAGGAACTTTTATCAGTGCT 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GGAGAAACTGCTGAGAACACTAAGGGCACTAGAACAAGCTCAGGAACTTTTATCAGTGCT 574
Query 527 TCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATTGCAAGAGCTACGATG 586
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 575 TCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATCGCAAGAGCTACGATG 634
Query 587 GTCCCAAGGTCCCATGGAGAGTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTAT 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 ATCCCAAGGTCCCATGGAGAGTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTAT 694
Query 647 GATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGATT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGATT 754
Query 707 GCTTCATTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACCATGTTCCCATTT 766
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACCATGTTCCCATTT 814
Query 767 GAGAACGGTTCTAATATGGGCACCGGATACGATTACAAGCAATGCATTGGGTTGAAAGTA 826
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 815 GAGAACGGTTCTAATATGGGCATCGGATACGATTACAAGCAATGTATTGGGTTGAAAGTA 874
Query 827 AAGCCTCGGAAAGGAGATGGTCTACTTTTTTATTCCGTGTTTCCAAATGGAACGATTGAT 886
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 875 AAGCCTCGGAAAGGAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGAT 934
Query 887 CAGACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCGACCAAA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 935 CAGACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCAACCAAA 994
Query 947 TGGATCAGAGACCAAAACCAGGAAGAATAAGTTAGGT 983
||||||||||||||| |||||||||||||||||||||
Sbjct 995 TGGATCAGAGACCAAGACCAGGAAGAATAAGTTAGGT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5