BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491288
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33905.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1629 0.0
AT2G14860.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 501 5e-141
> AT4G33905.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:16253815-16255612 REVERSE LENGTH=1056
Length=1056
Score = 1629 bits (882), Expect = 0.0
Identities = 1000/1057 (95%), Gaps = 7/1057 (1%)
Strand=Plus/Plus
Query 1 CTCGGAGCCATCACACGACAATGACCGGCGCATTGTTTAGAAACGCTGCCTCCGAAGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 CTCGGAGCCATCACACGACAATGACCGGCGCATTGTTTAGAAACGCTGCTTCCGACGCCG 60
Query 61 CTCGGATCTTCCGGTTAAAGCTAACTGCGACGGCGAATCCTTTCGGAAAGCTCGACCCTT 120
|||||||||| || ||| ||| | | ||| | |||||||||| ||||||||||||||||
Sbjct 61 CTCGGATCTTTCGATTACAGCGAGCAACGATGACGAATCCTTTTGGAAAGCTCGACCCTT 120
Query 121 TACCGATAGGAGGAAACATCCGGCGATTGCAGTCGAGGCCTTTTTATCGTACGCCTCAGT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCGATAGGAGGAAACATCCAGCGATTGCAGTCGAGGCCTTTTTATCGTACGCCTCAGT 180
Query 181 TTCTCGGGAAAGCAAAGGAAACCGGAGTCTCTGGTTTCTGTAC-T-T-C-T-T-CGTCTT 234
|||||||||||||||||||||| || ||||||||||||||| | | | | | | ||||||
Sbjct 181 TTCTCGGGAAAGCAAAGGAAACAGGTGTCTCTGGTTTCTGTTCGTCTTCGTCTTCGTCTT 240
Query 235 CTTCGACGGTCTCTACTGCAGGATTCATCAGTTGGTATTTGGGAATGGTGAAATCGCGGC 294
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 241 CTTCGACGGTCTCTACAGCAGGATTCATCGGATGGTATTTGGGAATGGTGAAATCTCGGC 300
Query 295 CGGTTCTGACCAAATCCGTCACGTCCTCGCTTATTTACATAGCCGCCGACTTGTCTTCGC 354
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 CGGTTCTTACCAAATCCGTCACGTCCTCGCTTATTTACATAGCAGCCGATTTGTCTTCGC 360
Query 355 AGACAATTCCACAAGCTTCAGTGGAGTCTTATGACTTGGTAAGAACAGCAAGGATGGCAG 414
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 361 AGACAATTCCACAAGCTTCAGTGGATTCTTATGACTTGGTAAGAACAGCAAGGATGGGAG 420
Query 415 GATATGGGTTATTAATCTTGGGTCCTACACTTCACTATTGGTTCAATCTCATGTCAAGAC 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GATATGGGTTATTAATCTTGGGTCCTACACTTCACTATTGGTTCAATCTCATGTCAAGTC 480
Query 475 TCTTCCCAAAACGAGATTTGATCACAACGTTTAAGAAAATGGCCATGGGACAGACCGTCT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TCTTCCCAAAACGAGATTTGATCACAACGTTTAAGAAAATGGCCATGGGACAGACAGTCT 540
Query 535 ACGGGCCTGCCATGAATGTTGTTTTCTTCTCACTGAATGCAGCCTTACAGGGTGAAAACG 594
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 541 ATGGGCCTGCCATGAATGTTGTTTTCTTCTCACTGAATGCAGCCCTACAGGGTGAAAATG 600
Query 595 GTTCAGAGATAGTTGCTAGATTGAAAAGGGACCTACTTCCCACAATGCTAAATGGTGTCA 654
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 GTTCAGAGATAGTTGCTAGATTGAAAAGGGACCTACTTCCCACAATGCTTAATGGTGTCA 660
Query 655 TGTATTGGCCTTTGTGTGATTTTATTACATTCAAGTTCTTCCCAGTTCATTTACAGCCAC 714
|||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||
Sbjct 661 TGTATTGGCCTTTGTGTGATTTTATTACTTTCAAGTTCTGCCCTGTTTATTTACAGCCAC 720
Query 715 TTGTGAGCAACTCGTTTTCATATTTATGGACAATCTACATAACTTATATGGCAAGCCGTG 774
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGTGAGCAACTCGTTTTCGTATCTATGGACAATCTACATAACTTATATGGCAAGCCGTG 780
Query 775 CGAAGCCAACAGCCATTGCAATTTGAAAAAGCTCTCTGGGAAACTCTCTCAGTTTAAAAA 834
||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 CGACGCCAACCGCCATTGAAATTTGAAAAAGCTCTCTGGGAAACTCTCTCAGTTTAGAAA 840
Query 835 TGAAGAAATGAAGCCaaaaaaaaCTTTTACTAAAAAGAAACAGAGCATTCTTCAACATTC 894
||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 841 TGAAGAAATGAAGCCAAAAAACACTTTTACTAAAA-GAAACAGGGCATTCTTCAACATTC 899
Query 895 TTTGTTTCCTCTCTCCAGATTTTAGGAGGATATAATGTAAAGAGTTTTGGGAAAAACTGT 954
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 900 TTTGTTTCCTCTCTCCAGATTTTAGGAGGATATAATGTAAGGAGTTTTGGGGAAAACTGT 959
Query 955 GCATTTGGACATGTCTTACACTCTTAGATTTAATTGACTTCTATGTTTAGTATTACATAT 1014
||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |
Sbjct 960 GCATTTGGACATGTCTTACACTCTTAGATTTAATTCAATTCTATGTTTAGTATTCCATGT 1019
Query 1015 AATATTTGAGTAAAATGGTGGTTCTTTAGCTTCTATC 1051
||||||||||||||||||||||||||||||||| |||
Sbjct 1020 AATATTTGAGTAAAATGGTGGTTCTTTAGCTTCGATC 1056
> AT2G14860.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr2:6387624-6389628 REVERSE LENGTH=1020
Length=1020
Score = 501 bits (271), Expect = 5e-141
Identities = 436/515 (85%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 267 TGGTAT-TTGGGAATGGTGAAATCGCGGCCGGTTCTGACCAAATCCGTCACGTCCTCGCT 325
|||||| || || ||||| ||||| | || ||| |||||||| ||||| ||||| ||
Sbjct 291 TGGTATCTT-GGTATGGTTAAATCACACCCAGTTGTGACCAAAAGTGTCACTTCCTCTCT 349
Query 326 TATTTACATAGCCGCCGACTTGTCTTCGCAGACAATT-CCACAAGCTTCAGT-GGAGTCT 383
||||||||| ||||||||||||||||| ||||| ||| | | || |||| | ||||||
Sbjct 350 TATTTACATTGCCGCCGACTTGTCTTCTCAGACGATTGCGA-AAACTTC-TTCTGAGTCT 407
Query 384 TATGACTTGGTAAGAACAGCAAGGATGGCAGGATATGGGTTATTAATCTTGGGTCCTACA 443
||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||| |||
Sbjct 408 TATGACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACA 467
Query 444 CTTCACTATTGGTTCAATCTCATGTCAAGACTCTTCCCAAAACGAGATTTGATCACAACG 503
|||||||| ||||||||| |||||||||||||||| || |||| ||||||||||||||||
Sbjct 468 CTTCACTACTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACG 527
Query 504 TTTAAGAAAATGGCCATGGGACAGACCG-TCTACGGGCCTGCCATGAATGTTGTTTTCTT 562
|||||||||||||| ||||||||||| | ||||||||||| |||| |||| |||||||
Sbjct 528 TTTAAGAAAATGGCTATGGGACAGAC-GATCTACGGGCCTATTATGACTGTTATTTTCTT 586
Query 563 CTCACTGAATGCAGCCTTACA-GGGTGAAAACGGTTCAGAGATAGTTGCTAGATTGAAAA 621
|||| |||||||| || |||| ||| ||| |||||||| ||| |||| ||||||||||
Sbjct 587 CTCATTGAATGCATCCCTACAAGGG-GAACGCGGTTCAGTTATACTTGCCAGATTGAAAA 645
Query 622 GGGACCTACTTCCCACAATGCTA-AATGGTGTCATGTATTGGCCTTTGTGTGATTTTATT 680
||||| |||| ||| | | || || |||||||||||||||||| | |||||||||||
Sbjct 646 GGGACTTACTCCCCGCGCT-CTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATC 704
Query 681 ACATTCA-AGTTCTTCCCAGTTCATTTACAGCCACTTGTGAGCAACTCGTTTTCATATTT 739
||||||| | |||||||| |||||||||||||| ||||| |||||||| ||||| ||| |
Sbjct 705 ACATTCAGA-TTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCATTTTCGTATGT 763
Query 740 ATGGACAATCTACATAACTTATATGGCAAGCCGTG 774
|||||| |||||||| ||||| ||||||| |||||
Sbjct 764 ATGGACTATCTACATGACTTACATGGCAAACCGTG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5