BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491290
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33890.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2248 0.0
> AT4G33890.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G14850.1);
Has 133 Blast hits to 131 proteins in 15 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 129; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:16249643-16251379
FORWARD LENGTH=1558
Length=1558
Score = 2248 bits (1217), Expect = 0.0
Identities = 1446/1551 (93%), Gaps = 38/1551 (2%)
Strand=Plus/Plus
Query 1 AACACGGAGAACCAAAAAACAGAAGACAAGAGAAGATGAAACGAAGAAACAAGCAAGATC 60
|||||||||||||||||||||||||| ||| | | ||||||||||||||||| |||||||
Sbjct 18 AACACGGAGAACCAAAAAACAGAAGAGAAGCG-ATATGAAACGAAGAAACAAACAAGATC 76
Query 61 A---TCCCTTTTGCCTTTAGGGCACAAAGGGGAAGCCTTTTTCACTGGGTATGTGTTGAG 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ATCGTCCCTTTTGCCTTTAGGGCACAAAGGGGAAGCCTTTTTCACTGGGTATGTGTTGAG 136
Query 118 AATTTGGGGGTTTTAGGTTTTTGTTTCAGAAGAGAGAATCTGGGATCTTAAAAATCGAAA 177
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 137 AATTTGGGGTTTTTAGGTTTTTGGCTCAGAAGAGAGAATCTGGGATCTTAAAAATCGAAA 196
Query 178 CTTTCTACATGTGGTTTTAGTTCAACACAAGTATAGTTGTTGAAGATGGGATCAGATCAA 237
||||||| ||||||||||||||| | || | ||||||| ||||||||||||| |||||
Sbjct 197 CTTTCTAGATGTGGTTTTAGTTC-A-AC---T-TAGTTGTAGAAGATGGGATCAAATCAA 250
Query 238 GGTTCTTCCAGGTTAGATACGTTAGAGATTAAAGCTCTCATTTTGCGGGAAATTGGGCAT 297
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 251 GGTTCTTCCAGGTTAGATACGTTAGAGATTAAAGCTCTCATTTACCGGGAAATTGGGAAT 310
Query 298 CAAAGAGCTGAGAGTTACTTCCATCAGCTCGGAAGATTCTTTGCCTTGAAGATCACCAAA 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 311 CAAAGAGCTGAGAGTTACTTCAATCAGCTCGGAAGATTCTTTGCCTTGAAGATCACCAAA 370
Query 358 TCTGAATTCGACAACTTGTGTATCAAGACCATTGGTAGACAAAACATCCATCTTCATAAC 417
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTGAATTCGACAAGTTGTGCATCAAGACCATTGGTAGACAAAACATCCATCTTCATAAC 430
Query 418 CGTCTTATACGCTCCATCATCAAGAATGCTAGTGTTGCGAAGTCTCCCCCATCTAGATTT 477
||||||||||| |||||||||||||||||| || |||| || ||| ||| | ||||
Sbjct 431 CGTCTTATACGTTCCATCATCAAGAATGCTTGTATTGCCAAATCT---CCA-C--CATTT 484
Query 478 ACAAAGAAAGGTGGGAGCTTTGTTAGATTTGGTAATGGGAATTC---GAAGAACAATCAA 534
| ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 485 ATAAAGAAAGGTGGGAGCTTTGTTAGATTTGGTAATGGGGATTCGAAGAAGAACAGTCAA 544
Query 535 ATTCAGCCGCTTTATGGAGATTCTGCGTTTTCTCCTTCGACTCGCAAATGCAGGTCAAGG 594
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 545 ATTCAGCCGCTTCATGGAGATTCTGCGTTTTCTCCTTCGACTCGTAAATGCAGGTCAAGG 604
Query 595 AAGTTTAGAGACAGGCCAAGTCCACTTGGTCCACTTGGGAAGCCTCAGAGTCTAACGACA 654
||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 605 AAGTTGAGAGACAGGCCAAGTCCACTTGGTCCACTTGGGAAGCCTCATAGTTTAACTACG 664
Query 655 ACAAATGAGGAGTCGATGTCCAAGGCACAAAGTGCTACTGAATTGTTGTCTCTAGGAAGT 714
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACGAATGAGGAGTCAATGTCAAAGGCACAAAGTGCTACTGAATTGTTGTCTCTAGGAAGT 724
Query 715 AGACCTCCCGTGGAAGTTGTGTCTGTGGAGGAAGGAGAAGAAGTTGAACAAATAGCAGGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AGACCTCCCGTGGAAGTTGTGTCTGTGGAGGAAGGAGAAGAAGTTGAACAAATAGCAGGA 784
Query 775 --A-GTCCAAGTGTTCAGAGCCGGTGTCCTCTCACTGCTCCGCTTGGTGTTTCTATGAGT 831
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGAAGTCCAAGTGTTCAGAGCCGGTGTCCTCTCACTGCTCCGCTTGGTGTTTCTATGAGT 844
Query 832 CTTCGGAATGGAGTTACTAGAAAGTCTATTTCCAATGTGTCTATGTGTAGCAGTAGTTTC 891
||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 845 CTTAGGAATGGAGCTACTAGAAAGTCTGTTTCCAATGTGTCTATGTGTAGCAGAAGTTTC 904
Query 892 AACCGCGAGACTTGTCAAAACAACGGTGAACTACCTGATACAAGAACGCTGAGGACTCGG 951
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 905 AACCGCGAGACTTGTCAGAACAACGGTGAGCTACCTGATACAAGAACGCTGAGGAGTCGG 964
Query 952 TTGGAGAGGAGATTGGAGATGGAGGGGCTAAAGATAACAATGGACTCTGTTAGTCTTCTT 1011
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 965 TTGGAGAGGAGATTGGAGATGGAGGGGCTAAAGATAACTATGGACTCTGTTAGTCTTCTT 1024
Query 1012 AATAGCGGATTGGATGTGTTTATGAGAAGGCTGATTGAGCCTTGTTTGAGTTTGGCTAAT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AATAGCGGATTGGATGTGTTTATGAGAAGGCTGATTGAGCCTTGTTTGAGTTTGGCTAAT 1084
Query 1072 ACTCGATATGGGACTGATCGGGTGAGAGAGATGAATTACCAGCATACACAGCAAAGCAGA 1131
||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1085 ACTCGATGTGGGACTGATCGGGTTAGAGAGATGAATTACCAGTATACACAGCAAAGCAGA 1144
Query 1132 AGGCTTTCGTATGTATCGATGTCAGATTTTCGTGCTGGTATGGAGTTGAATCCTCAGATT 1191
|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1145 AGGCTTTCATATGTATCGATGTCAGATTTTCGTGCTGGTATGGAGTTGAATACTGAGATA 1204
Query 1192 CTTGGAGAAGATTGGCCTATAAATATGGAGAAAATCTGTTCCCGTGCTTCAGACAAGTAA 1251
|||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||
Sbjct 1205 CTTGGAGAAGATTGGCCTATGCATATGGAGAAGATCTGCTCCCGTGCTTCAGATAAGTAA 1264
Query 1252 AGAACAAACACCATAGGTTAGATACATAGCATTTGATTTTACTCTGATT-GTTTT-CTGG 1309
|||||||||| ||||||||||||||||||||||||| ||| |||| || | ||| | |
Sbjct 1265 AGAACAAACATCATAGGTTAGATACATAGCATTTGAGTTT--TCTGGTTTGGTTTGC-GC 1321
Query 1310 T-TTGAACAAAGTTACTGGGATGGTTCAAGTTTCAATAGAAGAAGGTTTTGAAGAGAAGA 1368
| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1322 TGTTGAAAAAAGTTACTGGGATGGTCCAAGTTTCAATGGAAGAAGGTTTTGAAGAGAAGA 1381
Query 1369 AGGGTGGGTCTTCTTGATGTTGTACAAGTTCAGATAGTAGAGTGAGATT-AAGTA-GAGG 1426
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 1382 AGGGTGGGTCTTCTTGATGTTGTACAAGTTCAGATAATAGAGTGAGATTTAAGTAAGAGT 1441
Query 1427 TTTTT--GAAGTAAAACGCCATTT-GTTTAGCTGATTTGTTTTTCTCTC--GTGTATTTT 1481
||||| |||||||| || ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1442 TTTTTTTGAAGTAAA-CGACATTTTGTTTAGCTGATTTGTTTTTCTCTCATGTGTATTTT 1500
Query 1482 TCCTTTGTTTGCTCTCTGATGTAA-CAAAATTAATAATGAAAGCAAAAAAG 1531
||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1501 TCCTT-GTTTGCTCTCTGATGTAAACAAAGTTAATAATGAAAGCAAAAAAG 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5