BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491291 Length=1267 Score E Sequences producing significant alignments: (Bits) Value AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | ch... 1982 0.0 AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 255 6e-67 > AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239363-16241137 REVERSE LENGTH=1347 Length=1347 Score = 1982 bits (1073), Expect = 0.0 Identities = 1213/1278 (95%), Gaps = 19/1278 (1%) Strand=Plus/Plus Query 1 ACTTCTCACAAGACTTCCAACTAACGATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ACTTCTCACAAGACTTCCAACTAACAATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60 Query 61 CGCTTAGTTAACAAAACAAAT-AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGG 119 |||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 61 CGCTTAGTTAACAAAACATATAAAAATGGAAGCCATGGGAGAATGGAGCAACAACCTCGG 120 Query 120 AGGAATGTACACTTATGCAACCGAGGAGGCCGATTTCATGAACCAGCTCCTTGCCTCTTA 179 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 121 AGGAATGTACACTTATGCAACCGAGGAAGCCGATTTCATGAACCAGCTTCTCGCCTCTTA 180 Query 180 TGATCATCCTGGCACCGGCTCATCCTCTGGTGCA--A-CCGGTGGTGATCACCACCAAGG 236 ||||||||||||||||||||||||||| || ||| | || |||||| |||||||||| Sbjct 181 TGATCATCCTGGCACCGGCTCATCCTCCGGCGCAGCAGCCAGTGGTG---ACCACCAAGG 237 Query 237 CTTGTATTGGAACCTTGGTTCTCATCACAACCATCTTAGCCTCGTGTCTGAAGCCGGTAG 296 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 238 CTTGTATTGGAACCTTGGTTCTCATCACAACCACCTTAGCCTCGTGTCTGAAGCCGGTAG 297 Query 297 TTTCTGCTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATACTACACCGT 356 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 298 CTTCTGTTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATATTACACCGT 357 Query 357 TGTTCCACCCGCGGCTGAAGAAAACCAAAATGGGACAATGGACTTTGGGATGGAAGATGT 416 |||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 358 TGTTCCACCCACGGTTGAAGAGAACCAAAATGAGACAATGGACTTTGGGATGGAAGATGT 417 Query 417 GACCATCAACACAAACTCCTACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 476 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GACCATCAATACAAACTCATACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 477 Query 477 ATA-TACCTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAAAACCAAGATGACG 535 ||| | | |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 478 ATACT-CTTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAGAACCACGATGACG 536 Query 536 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCa 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 596 Query 596 aaaaaaGATCCCGTGCCACATCTAATGATAAAAACAAGAGAGCAAGAGTGAATAAGAGGA 655 |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 597 AAAAGAGATCCCGTGCCACATCTACTGATAAAAACAAGAGAGCAAGAGTGAATAAGAGG- 655 Query 656 G-CCAGAAGAACATAGAAATGAGTGGGGATAATAATGGAGGGgaagaggaagaa-g-gag 712 | |||||||||| |||| |||||||||||||| |||| ||| |||||||||||| | ||| Sbjct 656 GCCCAGAAGAACGTAGAGATGAGTGGGGATAACAATGAAGGAGAAGAGGAAGAAGGAGAG 715 Query 713 a-gaagttgaagaaaagaaagaaTGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 771 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 ACGAAGTTGAAGAAAAGAAAGAATGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 775 Query 772 TTTTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 831 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TTCTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 835 Query 832 TCCAAGGAAGATGATGCCTCAAAGGCCCTCAATCTCAATGGCAAAACCAGAGCCAGTCGT 891 || |||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 836 TCTAAGGAAGATGATCCCTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGT 895 Query 892 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 955 Query 952 AGATTAAGGATTTTACAAAATCTCGTCCCTAATGGAACAAAGGTTGATATCAGTACGATG 1011 ||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| Sbjct 956 AGACTAAGGATTTTACAAAATCTCGTCCCCAATGGAACAAAGGTCGATATTAGTACAATG 1015 Query 1012 CTTGAGGAAGCTGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1071 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CTTGAGGAAGCAGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1075 Query 1072 GATGATCTATGGATGTATGCGCCAATTGCTTTCAACGGGATGGACATTGGTCTCAGCTCA 1131 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1076 GATGATCTATGGATGTATGCGCCGATTGCTTTCAATGGGATGGACATTGGTCTCAGCTCA 1135 Query 1132 CCGAGATGAAGCACAAAACTTGTGATTTTAGTTGGA-ATTTTTCTCTTATATATAACCAA 1190 ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1136 CCGAGATGAAGCAGAAAACTTGTGATTTTAGTTGGATATTTT-CTCTTATATATAACCAA 1194 Query 1191 AAATGTAAAATTCTTTT-CTTTTTTAATACATTCTCCGCCTTCGGACGAGTTCGATTATA 1249 |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1195 AAATGTAATATTCTTTTTCTTTTTTAATA--TTCTCCGCCTTCGGACGAGTTCGATTATA 1252 Query 1250 ATTTCTCGTACGATGTTC 1267 | |||||||||||||||| Sbjct 1253 AATTCTCGTACGATGTTC 1270 > AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321587-6323397 REVERSE LENGTH=1364 Length=1364 Score = 255 bits (138), Expect = 6e-67 Identities = 177/196 (90%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 927 GAAAAGAAGAGAAAGGATTAACGAGAGATTAAGGATTTTACAAAATCTCGTCCCTAATGG 986 |||||||||||| ||||| |||||||| |||||||||| ||| |||||||||||||||| Sbjct 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942 Query 987 AACAAAGGTTGATATCAGTACGATGCTT-GAGGAAGCTGTTCATTACGTCAAATTTTTGC 1045 ||||||||||||||| || |||||| || || ||||| || || |||||||||||| | | Sbjct 943 AACAAAGGTTGATATTAGCACGATG-TTGGAAGAAGCAGTACAATACGTCAAATTTCTAC 1001 Query 1046 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTTCA 1105 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1002 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACA 1061 Query 1106 ACGGGATGGACATTGG 1121 |||| ||||||||||| Sbjct 1062 ACGGAATGGACATTGG 1077 Score = 69.4 bits (37), Expect = 8e-11 Identities = 87/109 (80%), Gaps = 11/109 (10%) Strand=Plus/Plus Query 82 AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGGAGGAATGTACACTTATGCAACC 141 |||||||||||||||||||||||||||||| ||| || ||||| || | | || Sbjct 83 AAAATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATA---T-A--CA--- 133 Query 142 GAGGAGGCCGA-TTTCATGAACCAGCTCCTTGCCTCTTATGATCATCCT 189 ||||| || || ||| ||||| |||||||||||||| ||||| || ||| Sbjct 134 GAGGAAGCTGACTTT-ATGAATCAGCTCCTTGCCTCCTATGAGCAACCT 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62298876345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5