BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491291
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | ch... 1982 0.0
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 255 6e-67
> AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239363-16241137 REVERSE LENGTH=1347
Length=1347
Score = 1982 bits (1073), Expect = 0.0
Identities = 1213/1278 (95%), Gaps = 19/1278 (1%)
Strand=Plus/Plus
Query 1 ACTTCTCACAAGACTTCCAACTAACGATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTCTCACAAGACTTCCAACTAACAATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60
Query 61 CGCTTAGTTAACAAAACAAAT-AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGG 119
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGCTTAGTTAACAAAACATATAAAAATGGAAGCCATGGGAGAATGGAGCAACAACCTCGG 120
Query 120 AGGAATGTACACTTATGCAACCGAGGAGGCCGATTTCATGAACCAGCTCCTTGCCTCTTA 179
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 121 AGGAATGTACACTTATGCAACCGAGGAAGCCGATTTCATGAACCAGCTTCTCGCCTCTTA 180
Query 180 TGATCATCCTGGCACCGGCTCATCCTCTGGTGCA--A-CCGGTGGTGATCACCACCAAGG 236
||||||||||||||||||||||||||| || ||| | || |||||| ||||||||||
Sbjct 181 TGATCATCCTGGCACCGGCTCATCCTCCGGCGCAGCAGCCAGTGGTG---ACCACCAAGG 237
Query 237 CTTGTATTGGAACCTTGGTTCTCATCACAACCATCTTAGCCTCGTGTCTGAAGCCGGTAG 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 CTTGTATTGGAACCTTGGTTCTCATCACAACCACCTTAGCCTCGTGTCTGAAGCCGGTAG 297
Query 297 TTTCTGCTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATACTACACCGT 356
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 CTTCTGTTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATATTACACCGT 357
Query 357 TGTTCCACCCGCGGCTGAAGAAAACCAAAATGGGACAATGGACTTTGGGATGGAAGATGT 416
|||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 358 TGTTCCACCCACGGTTGAAGAGAACCAAAATGAGACAATGGACTTTGGGATGGAAGATGT 417
Query 417 GACCATCAACACAAACTCCTACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 476
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACCATCAATACAAACTCATACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 477
Query 477 ATA-TACCTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAAAACCAAGATGACG 535
||| | | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 478 ATACT-CTTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAGAACCACGATGACG 536
Query 536 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 596
Query 596 aaaaaaGATCCCGTGCCACATCTAATGATAAAAACAAGAGAGCAAGAGTGAATAAGAGGA 655
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 AAAAGAGATCCCGTGCCACATCTACTGATAAAAACAAGAGAGCAAGAGTGAATAAGAGG- 655
Query 656 G-CCAGAAGAACATAGAAATGAGTGGGGATAATAATGGAGGGgaagaggaagaa-g-gag 712
| |||||||||| |||| |||||||||||||| |||| ||| |||||||||||| | |||
Sbjct 656 GCCCAGAAGAACGTAGAGATGAGTGGGGATAACAATGAAGGAGAAGAGGAAGAAGGAGAG 715
Query 713 a-gaagttgaagaaaagaaagaaTGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 771
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACGAAGTTGAAGAAAAGAAAGAATGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 775
Query 772 TTTTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 831
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTCTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 835
Query 832 TCCAAGGAAGATGATGCCTCAAAGGCCCTCAATCTCAATGGCAAAACCAGAGCCAGTCGT 891
|| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 836 TCTAAGGAAGATGATCCCTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGT 895
Query 892 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 955
Query 952 AGATTAAGGATTTTACAAAATCTCGTCCCTAATGGAACAAAGGTTGATATCAGTACGATG 1011
||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 956 AGACTAAGGATTTTACAAAATCTCGTCCCCAATGGAACAAAGGTCGATATTAGTACAATG 1015
Query 1012 CTTGAGGAAGCTGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1071
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTGAGGAAGCAGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1075
Query 1072 GATGATCTATGGATGTATGCGCCAATTGCTTTCAACGGGATGGACATTGGTCTCAGCTCA 1131
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1076 GATGATCTATGGATGTATGCGCCGATTGCTTTCAATGGGATGGACATTGGTCTCAGCTCA 1135
Query 1132 CCGAGATGAAGCACAAAACTTGTGATTTTAGTTGGA-ATTTTTCTCTTATATATAACCAA 1190
||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1136 CCGAGATGAAGCAGAAAACTTGTGATTTTAGTTGGATATTTT-CTCTTATATATAACCAA 1194
Query 1191 AAATGTAAAATTCTTTT-CTTTTTTAATACATTCTCCGCCTTCGGACGAGTTCGATTATA 1249
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1195 AAATGTAATATTCTTTTTCTTTTTTAATA--TTCTCCGCCTTCGGACGAGTTCGATTATA 1252
Query 1250 ATTTCTCGTACGATGTTC 1267
| ||||||||||||||||
Sbjct 1253 AATTCTCGTACGATGTTC 1270
> AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321587-6323397 REVERSE LENGTH=1364
Length=1364
Score = 255 bits (138), Expect = 6e-67
Identities = 177/196 (90%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 927 GAAAAGAAGAGAAAGGATTAACGAGAGATTAAGGATTTTACAAAATCTCGTCCCTAATGG 986
|||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||
Sbjct 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942
Query 987 AACAAAGGTTGATATCAGTACGATGCTT-GAGGAAGCTGTTCATTACGTCAAATTTTTGC 1045
||||||||||||||| || |||||| || || ||||| || || |||||||||||| | |
Sbjct 943 AACAAAGGTTGATATTAGCACGATG-TTGGAAGAAGCAGTACAATACGTCAAATTTCTAC 1001
Query 1046 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTTCA 1105
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1002 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACA 1061
Query 1106 ACGGGATGGACATTGG 1121
|||| |||||||||||
Sbjct 1062 ACGGAATGGACATTGG 1077
Score = 69.4 bits (37), Expect = 8e-11
Identities = 87/109 (80%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 82 AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGGAGGAATGTACACTTATGCAACC 141
|||||||||||||||||||||||||||||| ||| || ||||| || | | ||
Sbjct 83 AAAATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATA---T-A--CA--- 133
Query 142 GAGGAGGCCGA-TTTCATGAACCAGCTCCTTGCCTCTTATGATCATCCT 189
||||| || || ||| ||||| |||||||||||||| ||||| || |||
Sbjct 134 GAGGAAGCTGACTTT-ATGAATCAGCTCCTTGCCTCCTATGAGCAACCT 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5