BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491293

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33865.1 | Symbols:  | Ribosomal protein S14p/S29e family pr...   608    1e-173


> AT4G33865.1 | Symbols:  | Ribosomal protein S14p/S29e family 
protein | chr4:16233209-16234196 REVERSE LENGTH=439
Length=439

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 397/429 (93%), Gaps = 7/429 (2%)
 Strand=Plus/Plus

Query  1    CTCTCTCGCGCCGCACTTGTCTCGTCTTCTTGATCTAGTCGCTTTGAGCTGTGAGCAGAG  60
            |||||||| ||||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct  9    CTCTCTCGAGCCGCACATATTTCGTCTTCTTGATCTAATCGCTTTGAGCTGTTAGCAGAG  68

Query  61   AGCAGTCGACGAGAATGGGCCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTC  120
            |||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  69   AGCAGTCGACAATCATGGGTCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTC  128

Query  121  CTGGTTCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129  CTGGTTCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTC  188

Query  181  TCAATTGCTGCAGGCAGTGTTTCCGTAGCAACGCCAAGGAAATCGGTTTCATTAAGTACC  240
            |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  189  TCAACTGCTGCAGACAGTGTTTCCGTAGCAACGCCAAGGAAATCGGATTCATTAAGTACC  248

Query  241  GTTGATGATCGATGTT-T--ACACAGGAGCATTGTGTCTTTTGGGTTCTTAAACTTTATG  297
            |||||||||||||||| |  ||||||||||||  ||||||||| ||| |||||||||  |
Sbjct  249  GTTGATGATCGATGTTGTTCACACAGGAGCATCATGTCTTTTGAGTT-TTAAACTTT--G  305

Query  298  CGTTGAACTTTGTAATCGATTTATCGACATTGAACTAATTTGATAATGTTTTTGAGCTGT  357
            |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  306  CGTTGAACTT-GTAATCGATTTATCGACATTGAACTAATTTGATTATGTTTTTGTGCTGT  364

Query  358  TGAATCTATGCGTTACTTTGGTCTACTATTGCTGATAAATTTATCAAATATATTTGCTTA  417
            ||||||||   ||||||||| |||||||||||| |||| ||||||| |||||||||||||
Sbjct  365  TGAATCTACAAGTTACTTTGTTCTACTATTGCTTATAAGTTTATCAGATATATTTGCTTA  424

Query  418  ATTGATTAG  426
            |||||||||
Sbjct  425  ATTGATTAG  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5