BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491299
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33800.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1072 0.0
> AT4G33800.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16210009-16211409
REVERSE LENGTH=896
Length=896
Score = 1072 bits (580), Expect = 0.0
Identities = 775/862 (90%), Gaps = 42/862 (5%)
Strand=Plus/Plus
Query 1 AAATCTTTCTCAACACAGCTGTTCGATCTCAACAAGTATTTATATCttttttttttCTAA 60
||||||||||||||| |||||||||||||||| ||| || |||||| |||| || |||
Sbjct 31 AAATCTTTCTCAACATAGCTGTTCGATCTCAATAAGAATATATATC---TTTTCTTATAA 87
Query 61 AACATAAAAGAAGAAAATGTTGGGTTCAAGTAGTGGATGCGAGTCAGGATGGACTCTGTA 120
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 88 AACATAAAAGAAG-AAATGTTGGGGTCAAGTAGCGGATGCGAGTCAGGATGGACTCTGTA 146
Query 121 CTTAGACCAGTCGGTTTCTTCACCAACACCTTCTTGTTATAGAGACAGCAATGGGTTTGA 180
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 147 TTTAGACCAGTCTGTTTCTTCACCAAGTCCTTCTTGTTTTAGAGACAGCAATGGGTTTGA 206
Query 181 AAACAGAAGAAGAAGCAAAGATTCATGGGACCAACACAACGTGCATCAAGGAGACGAAGA 240
| ||||||||||||||||||||||||||||||| | | ||||||||| || | | ||
Sbjct 207 CAGCAGAAGAAGAAGCAAAGATTCATGGGACCAAAATTATGTGCATCAA-GA-A-G-AG- 261
Query 241 AGAAGAGGAAGAAGACGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGAAATAT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 262 -GAAGAAGAAGAAGACGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGGAATAT 320
Query 301 TTCCGAGGAAGATTCTGTGAATAAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 360
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCTGAGGAAGATTCTGTG---AAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 377
Query 361 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCAGTTCTTGATGATACTGCTAG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 378 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCACTTCTTGATGATACTGCTAG 437
Query 421 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 497
Query 481 GCAAAACTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GCAAACCTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 557
Query 541 GGACAATACAGCATTCCAAGAGCAGTATGGTTATTTGCATATGGAAACCAGATTCTAAAT 600
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 GGACAAAACAGCATTCCAAGAGCAGTGTGGTTATTTGCATATGGAAACCAGATTCTAAAT 617
Query 601 AACCAATCAAACTGAT-AAGAGCAGC---TATTTTGGACATTTGTGCAGCTTTTATGGAT 656
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 618 AACCAATCAAACTGATGAAGAGCAGCAGCTATTTTGGACATTTGTGAAGCTTTTATGGAT 677
Query 657 TCAA---G--T-A----A-----TGATTAAAGTGAATCTTAAA-GTCC-AAATATGAAAG 699
|||| | | | | ||||||||||||| ||| || |||| ||||||||||
Sbjct 678 TCAACTTGAATCATTTCAAGCAGTGATTAAAGTGAAACTTTAACGTCCCAAATATGAAAA 737
Query 700 ATAGGAAGGAGTTTTAAGCaaaaaaaaCCAACA-ATGAAGGGACGAAAAACAGT-TTCTC 757
||||||||||||||||||||||| | | | | | ||| | | ||||| || |||||
Sbjct 738 ATAGGAAGGAGTTTTAAGCAAAAGA--CTGATATA-GAACGAAAAAAAAAAAGGGTTCTC 794
Query 758 AAATCTCTCAATTGGAACTGAATCTTTCCTCTCTTTTGCTTTGTAATTTCTTCACAAACA 817
||||||| || |||| |||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 795 AAATCTC--AACTGGA-CTGATTCTTTTCTCTCTTTTGCTTTGTAATTTCGTCACAAACA 851
Query 818 AGTTTTCTTTGTAGCCGCCTTT 839
||||||| ||||||||||||||
Sbjct 852 AGTTTTCCTTGTAGCCGCCTTT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5