BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491300 Length=939 Score E Sequences producing significant alignments: (Bits) Value AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1242 0.0 > AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16201831-16203641 REVERSE LENGTH=979 Length=979 Score = 1242 bits (672), Expect = 0.0 Identities = 882/973 (91%), Gaps = 55/973 (6%) Strand=Plus/Plus Query 1 ATGCCATTTTCCGCCTCAATCTCATCGCCTTCTTC-TCTGGCGCTTCTCTCATCCCAAAA 59 |||||||||||||| |||||||||||||||||||| |||| ||| || || | Sbjct 25 ATGCCATTTTCCGCATCAATCTCATCGCCTTCTTCTTCTGTCGC-GCT-TC-T------- 74 Query 60 ACGATCGCCTCTCTCCTTCTTCTTCTTCACTCCCAAAACCCTAATCTTCAGCAGAACCAG 119 |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 75 TCGATCGCCTCTCTCTTTCTTCATCTTCACTCCCAAAACCCTAATCTTCACCAGAACCAG 134 Query 120 GATCTCTGATTTCCCTTATCCCCTTCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 179 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 135 GATCTCTGGTTTCCCTTA------TCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 188 Query 180 AAGGGATGATTTCACCGACGATACGAGGAACTGGAACCGGAAGATCAAACCGGAGTATGG 239 |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 189 GAGGGATGATTTCGCTGACGATACGAGGAGCTGGAACCGGAAGATCAAACCGGAGTATGG 248 Query 240 GTTCGATGAGGATTACGATGGAGAAGAAGACGAAGATGATCACGAGGAAGAAGATAGAAG 299 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 249 GTTCGATGAGGATTACGATGGAGAAGAAGATGATGATGATCACGAGGAAGAAGATAGAAG 308 Query 300 CTTGGATCTGTTACTTAGATTTGTTGAGAATGTTTTCAGAAAGATTTCGAAGAGAGCAAG 359 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 309 CTTGGATCTGTTACTTAGATTTGTAGAAAATGTTTTCAGAAAGATTTCTAAGAGAGCAAG 368 Query 360 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGATTTTCAGT 419 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 369 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGGTTTTCAGT 428 Query 420 GAATGGAGTACTTATTCTTGCCTTTTTGTGGATCTTGAAGGCTTTCCTCGAGGTAGCTTG 479 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 429 GAATGGAGTACTTATTCTTGCTTTTTTGTGGATTTTGAAGGCTTTCCTCGAGGTAGCTTG 488 Query 480 CACGCTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGTGT 539 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 489 CACACTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGAGT 548 Query 540 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGACCCTCGTGC 599 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 549 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGATCCTCGTGC 608 Query 600 ATGGAACGGGGTGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 659 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 ATGGAACGGGATGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 668 Query 660 TTCTAACTTTTGGGAG--CCATAATGGGGTTTAGGTTCTTCCAAGGCAATAAAACCACAG 717 | || ||||||||||| ||||||| | ||||||||||||||||||||||||||||||| Sbjct 669 T-CTGACTTTTGGGAGAGCCATAATTG--TTTAGGTTCTTCCAAGGCAATAAAACCACAG 725 Query 718 CTGAGTTCAGAATCAGATAGCAGTTACAGGGGATGTACATTGGCAGCGTCTGATGATTTA 777 ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||| Sbjct 726 CTGAGTTCAGAATCAGAAAGCAGTTACAGTGGATGTTCATTGGCAATGTCTGATGATTTA 785 Query 778 GTAAGTAAAAAA-GTGTAATATTTGTAGCATTCACCAAGTCAGCTATG---------A-- 825 |||||||||||| |||||||||| |||||||||||||||||||||||| | Sbjct 786 GTAAGTAAAAAAAGTGTAATATT-GTAGCATTCACCAAGTCAGCTATGCTGGTGTGTAGC 844 Query 826 --A-CT---AA----GTCGTCGCCAATGGTGACCATGTTTTATTAGTTTCTAAATAAATG 875 | || || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 845 TCAACTGGGAACTAAGTCGTCGCCAATGGTGACCATGTTTTCTTAGTTTCTAAATAAAT- 903 Query 876 AAACCAAATATATAGAACATACCATTTTCCTTGTAGTCTT--A-------CCAAAATTAG 926 |||||||| |||||||||||||| |||||||| |||| || | |||||||||| Sbjct 904 AAACCAAACATATAGAACATACCGTTTTCCTTCTAGTTTTGTATATATAACCAAAATTAG 963 Query 927 TAGACTTCAATTT 939 ||||||||||||| Sbjct 964 TAGACTTCAATTT 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45914010358 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5