BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491300
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1242 0.0
> AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; BEST Arabidopsis thaliana protein match
is: short hypocotyl in white light1 (TAIR:AT1G69935.1);
Has 40 Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16201831-16203641
REVERSE LENGTH=979
Length=979
Score = 1242 bits (672), Expect = 0.0
Identities = 882/973 (91%), Gaps = 55/973 (6%)
Strand=Plus/Plus
Query 1 ATGCCATTTTCCGCCTCAATCTCATCGCCTTCTTC-TCTGGCGCTTCTCTCATCCCAAAA 59
|||||||||||||| |||||||||||||||||||| |||| ||| || || |
Sbjct 25 ATGCCATTTTCCGCATCAATCTCATCGCCTTCTTCTTCTGTCGC-GCT-TC-T------- 74
Query 60 ACGATCGCCTCTCTCCTTCTTCTTCTTCACTCCCAAAACCCTAATCTTCAGCAGAACCAG 119
|||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 75 TCGATCGCCTCTCTCTTTCTTCATCTTCACTCCCAAAACCCTAATCTTCACCAGAACCAG 134
Query 120 GATCTCTGATTTCCCTTATCCCCTTCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 179
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 135 GATCTCTGGTTTCCCTTA------TCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 188
Query 180 AAGGGATGATTTCACCGACGATACGAGGAACTGGAACCGGAAGATCAAACCGGAGTATGG 239
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 189 GAGGGATGATTTCGCTGACGATACGAGGAGCTGGAACCGGAAGATCAAACCGGAGTATGG 248
Query 240 GTTCGATGAGGATTACGATGGAGAAGAAGACGAAGATGATCACGAGGAAGAAGATAGAAG 299
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 249 GTTCGATGAGGATTACGATGGAGAAGAAGATGATGATGATCACGAGGAAGAAGATAGAAG 308
Query 300 CTTGGATCTGTTACTTAGATTTGTTGAGAATGTTTTCAGAAAGATTTCGAAGAGAGCAAG 359
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 309 CTTGGATCTGTTACTTAGATTTGTAGAAAATGTTTTCAGAAAGATTTCTAAGAGAGCAAG 368
Query 360 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGATTTTCAGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGGTTTTCAGT 428
Query 420 GAATGGAGTACTTATTCTTGCCTTTTTGTGGATCTTGAAGGCTTTCCTCGAGGTAGCTTG 479
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 429 GAATGGAGTACTTATTCTTGCTTTTTTGTGGATTTTGAAGGCTTTCCTCGAGGTAGCTTG 488
Query 480 CACGCTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGTGT 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 489 CACACTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGAGT 548
Query 540 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGACCCTCGTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 549 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGATCCTCGTGC 608
Query 600 ATGGAACGGGGTGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 659
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATGGAACGGGATGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 668
Query 660 TTCTAACTTTTGGGAG--CCATAATGGGGTTTAGGTTCTTCCAAGGCAATAAAACCACAG 717
| || ||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 669 T-CTGACTTTTGGGAGAGCCATAATTG--TTTAGGTTCTTCCAAGGCAATAAAACCACAG 725
Query 718 CTGAGTTCAGAATCAGATAGCAGTTACAGGGGATGTACATTGGCAGCGTCTGATGATTTA 777
||||||||||||||||| ||||||||||| |||||| |||||||| |||||||||||||
Sbjct 726 CTGAGTTCAGAATCAGAAAGCAGTTACAGTGGATGTTCATTGGCAATGTCTGATGATTTA 785
Query 778 GTAAGTAAAAAA-GTGTAATATTTGTAGCATTCACCAAGTCAGCTATG---------A-- 825
|||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 786 GTAAGTAAAAAAAGTGTAATATT-GTAGCATTCACCAAGTCAGCTATGCTGGTGTGTAGC 844
Query 826 --A-CT---AA----GTCGTCGCCAATGGTGACCATGTTTTATTAGTTTCTAAATAAATG 875
| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 845 TCAACTGGGAACTAAGTCGTCGCCAATGGTGACCATGTTTTCTTAGTTTCTAAATAAAT- 903
Query 876 AAACCAAATATATAGAACATACCATTTTCCTTGTAGTCTT--A-------CCAAAATTAG 926
|||||||| |||||||||||||| |||||||| |||| || | ||||||||||
Sbjct 904 AAACCAAACATATAGAACATACCGTTTTCCTTCTAGTTTTGTATATATAACCAAAATTAG 963
Query 927 TAGACTTCAATTT 939
|||||||||||||
Sbjct 964 TAGACTTCAATTT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5