BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491304

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33740.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   846    0.0  


> AT4G33740.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G37820.1); 
Has 138210 Blast hits to 73191 proteins in 2959 species: Archae 
- 732; Bacteria - 18006; Metazoa - 48521; Fungi - 16820; 
Plants - 7078; Viruses - 1046; Other Eukaryotes - 46007 (source: 
NCBI BLink). | chr4:16186887-16189007 FORWARD LENGTH=1714
Length=1714

 Score =  846 bits (458),  Expect = 0.0
 Identities = 532/567 (94%), Gaps = 8/567 (1%)
 Strand=Plus/Plus

Query  6     AGATCGGAGTCAAGAAGATGGTGCACCGCCTGCAGGATTCTCTGAACCACA---GCCTGT  62
             |||||||||||||| ||||||||||| ||||||||||||||||||||||||   ||| ||
Sbjct  1068  AGATCGGAGTCAAGGAGATGGTGCACTGCCTGCAGGATTCTCTGAACCACAGCCGCCCGT  1127

Query  63    CTTGGAACTTGAGCAAACCCGTAATGACTCTGATCCCAACATCCCTATTTCTGCAAACAT  122
             ||||||||||||| ||| |||||| || ||||||||| ||||||||||||||||  ||||
Sbjct  1128  CTTGGAACTTGAGAAAAACCGTAACGAATCTGATCCCGACATCCCTATTTCTGCTGACAT  1187

Query  123   TACCAACAAAGATTCCATTCAAGATGAGTCCAAGAACTCAACTTCAGAATCTTCTCTACT  182
             |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  1188  TACCAACAAAGATTTCATTCAAGATGAGTCTAGGAACTCAACTTCAGAATCTTCTCTACT  1247

Query  183   TGAAAACATCGCTGGCTCAAACACGACCGAGGCGAATGAGAATTCAAGGTCTG-AGG-G-  239
             |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | 
Sbjct  1248  TGAAAACATCGCTGGCTCAAACACGACCGAGGTGAATGAGAATTCAAGGTCTGAAGGTGA  1307

Query  240   TGATGATGAATCAGGCGAAAAGGATAGTTCAAACATTTTCTCCACAGAGCTAACAGAGGA  299
             ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1308  TGATGATGAATCAGGTGAAAAGGAAAGTTCAAACATTTTCTCCACAGAGCTAACAGAGGA  1367

Query  300   GGCAGATAATACTTCCGAAACCTCGATTTCCCAAGAAGAGATGGATGCTCTCACTGATCC  359
             ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1368  GGCAGATAATACTTCCGGAACGTCGATTTCCCAAGAAGAGATGGATGCTCTCACTGATCC  1427

Query  360   ACAAACTCTGCCGGATATaagaatagaagggaatgaagaagatgaagaggaagcacttgg  419
             ||||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct  1428  ACAAACTCTTCCTGATATAAGAATAGAAGGCAATGAAGAAGATGAAGAGGAAGCAATTGG  1487

Query  420   agcagagagaaagaagCTCTAGTGGaaaaaaaGATAAGTTAAATGTGAAATGTTTTTTAT  479
             ||||||||||||||| ||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct  1488  AGCAGAGAGAAAGAAACTCTAGTGGAAAAAAGGATAAGTT-AATGTAAAATG-TTTTTAT  1545

Query  480   GCTTTTGCAGTTATGTCATTGTAAAAGCTAAAAACATCAGTCTGTCTCTGTTACTTAGTT  539
             ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1546  GCTTTTGCAGCCATGTCATTGTAAAAGCTAAAAACATCAGTCTGTCTCTGTTACTTAGTT  1605

Query  540   TCGCAAATCTGTATATTATTCATTTGG  566
             |||||||||||||||||||||||||||
Sbjct  1606  TCGCAAATCTGTATATTATTCATTTGG  1632



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27176673527


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5