BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491306
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1120 0.0
> AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37820.1);
Has 138210 Blast hits to 73191 proteins in 2959 species: Archae
- 732; Bacteria - 18006; Metazoa - 48521; Fungi - 16820;
Plants - 7078; Viruses - 1046; Other Eukaryotes - 46007 (source:
NCBI BLink). | chr4:16186887-16189007 FORWARD LENGTH=1714
Length=1714
Score = 1120 bits (606), Expect = 0.0
Identities = 720/773 (93%), Gaps = 16/773 (2%)
Strand=Plus/Plus
Query 56 AACTATAATAAACTCGAATCTCTAAAGAAAGCTTCTCTGTCTTCTTCTCTTAGATAACTC 115
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTATAATAAACTCGAAGCTCTAAAGAAAGCTTCTCTGTCTTCTTCTCTTAGATAACTC 60
Query 116 -T-CT---C-------AA--ACT-CT-CAGATGAAGAAAGCATCAAGCAGAAGCCAAAGA 159
| || | || | | | ||||||||||| |||||| |||||||||||||
Sbjct 61 TTACTCAGCTGAGAAGAAGTATTGTTGAAGATGAAGAAAACATCAACCAGAAGCCAAAGA 120
Query 160 GGAAGCAAAGGTATTAAAGGGAAGCATGTCCTGCAGATATGTGTTTTGCTTGGAGTTTGC 219
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 121 GGAAGCAAAGGTATCAAAGGGAAGCATGTCCTGCAGATATGTGTTCTGCTTGGAGTATGC 180
Query 220 ATTTGGTTAATCTATCAAGTGAAGTATTCTCATGATAAGAAGAAGGAATTTTATGAGAAA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTGGTTAATCTATCAAGTGAAGTATTCTCATGATAAGAAGAAGGAATTTTATGAGAAA 240
Query 280 GATGTCGAGAAATCGACGGTGGTGTTGTCGGAGATTGAAGATGGAGTGGTGAAGCTTGGG 339
||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 241 GATGTCGAGAAATCGACGGTGTTGTTGTCAGAGGTTGAAGATGGAGTGGTGAAGCTTGGG 300
Query 340 AGGAAAGATCTTGTTCCTAAGTATCATAACCAGAAGGAAAACGagaagcatgtggaagag 399
|||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 301 AGGAAAGATCTTCTTCCTAAGAATTATAACCAGAAGGAAAACGAGAAGCACGTGGAAGAG 360
Query 400 gatgaggatgaagaagaggttagtcatgaaggagaagagaaggagaagaagagtaaagta 459
|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||
Sbjct 361 GATGAGGATGAAGAAGAGATCAGTCATGGAGGTGAAGAGAAGGAGAAGAAGAGTAAAGTA 420
Query 460 gagaatggtaatcatgaggaggaggaagagaaagaagaagaagaggaagttgttgaggag 519
||||||||||||||||||||||||| |||||||| || ||||||||||| | ||||||
Sbjct 421 GAGAATGGTAATCATGAGGAGGAGGTGGAGAAAGACGAGGAAGAGGAAGTAGCTGAGGAT 480
Query 520 gatgaagaagataagaataagcaaggagaggaagTAGCTGAGGAGGATGAGGATGAGAAC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GATGAAGAAGATAAGAATAAGCAAGGAGAGGAAGTAGCTGAGGAGGATGAGGAAGAGAAC 540
Query 580 AAACATGAGGAAGATGAGATTGATGAACAAGATCAAAGTAAAACCGGTGGAGATACTGAT 639
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 541 AAACATGAGGAAGATGAGATTGATGAACAAGATCAAAGTAAAAATGCTGGAGATACTGAT 600
Query 640 AAGGATGATGAAACACTTgaagaagagaaagagagtggaaggagtgagaacgatgagaaa 699
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 AAGGATGATGAAACACTTGAAGAAGAGAAAGAGAGTGGAATGAGTGAGAACGATGAGAAA 660
Query 700 gaaaaagagaCTGATCATGCAGATGAGATTGATATGACCGTTGATGAGGCACGCGAGGAG 759
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 661 GAAAAAGAGACTAATCATGCAGATGAAATTGATATGACAGTTGATGAGGCACGCGAGGAG 720
Query 760 CATTACAAGGCTGATGATGCTTCCAGTGCAGTGTCTCATGAGTCTCGGTTACT 812
||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 721 CATTACAAGGCTGATGATGCTTCCAGTGCTGTGTCTCATGAGTCTCGGATACT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5