BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491308
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33720.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1048 0.0
> AT4G33720.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:16182752-16183533 FORWARD LENGTH=782
Length=782
Score = 1048 bits (567), Expect = 0.0
Identities = 723/792 (91%), Gaps = 36/792 (5%)
Strand=Plus/Plus
Query 1 TATATAACGTATTCAATCCTCACTTCTaaaacccacaaaaactttaaagttctaaacgaa 60
|||||||||| ||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 4 TATATAACGTGTTCAATCCTCACTTCAAAAACCCACAAAAACTTT--AG-----AACGAA 56
Query 61 aaaagatgaaaatctttaactcatctcaaaaCCTATTCGTGGCCATAACCTTTTTCCTTG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 57 AAAAGATGAAAATCTTTAACTCATCTCAAAACCTATTCTTGGCCATAACCTTTTTCCTTG 116
Query 121 TTCTCATAGTTCATCTAAAAGCCCAAGACAGTCCTCAAGACTTTTTGGCAGCTCACAACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 117 TTCTCATAGTTCATCTAAAAGCCCAAGACAGTCCTCAAGACTTTTTGGCAGTTCACAACC 176
Query 181 GAGCACGCGCTGAGGTTGGGGTGGGTCCCTTAAGATGGGACGAGAAGGTGGCTGCTTATG 240
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 GAGCACGAGCCGAGGTTGGGGTGGGACCCTTAAGATGGGACGAGAAGGTGGCTGCTTATG 236
Query 241 CCCGTAGCTATGCGAACCAGCGTAAAGGTGACTGCGCTATGAAACACTCTAGCGGACCCT 300
|||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 237 CCCGTAACTATGCTAACCAGCGTAAAGGTGACTGCGCTATGAAACACTCGAGCGGGTCCT 296
Query 301 ATGGAGAGAACATCGCTTGGAGCAGCGGTAGCATGACAGGCGTTGCAGCCGTTAACATGT 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 297 ATGGAGAGAACATCGCTTGGAGCAGCGGTAGCATGACAGGCGTAGCAGCAGTTGACATGT 356
Query 361 GGGTGGACGAGCAATTTGACTACGATTATAATTCCAACACATGTGCTTGGAACAAACAGT 420
||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||
Sbjct 357 GGGTGGACGAGCAATTTGACTACGATTATGATTCCAATACATGTGCATGGGACAAACAGT 416
Query 421 GTGGCCACTATACTCAGGTTGTGTGGAGAAACACGGCGAAGCTAGGATGTGCAAAAGTCA 480
|||||||||||||||||||||||||||||||| ||| || | | |||||||||||||| |
Sbjct 417 GTGGCCACTATACTCAGGTTGTGTGGAGAAACTCGGAGAGGTTGGGATGTGCAAAAGTGA 476
Query 481 AATGCAACAATGGTCAAACCTTTATCACTTGCAACTACGATCCTCCCGGTAACTGGGTTG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGCAACAATGGTCAAACCTTTATCACTTGCAACTACGATCCTCCCGGTAACTGGGTTG 536
Query 541 GCGAGTGGCCTTACTaaaa-aaaCCTCCATTGTAA-TGTTTTTGAATATATGTTTATACA 598
||||||||||||||||||| ||| ||||||| ||| |||||| ||||||||||| || ||
Sbjct 537 GCGAGTGGCCTTACTAAAAGAAAACTCCATT-TAAATGTTTTCGAATATATGTT-ATCCA 594
Query 599 CATG-A-AT--GTATTGTTTCCATGTTGTTCAGTTATACCAATCATATATATATCGTCAG 654
|||| | || ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 595 CATGTATATATGTATTGTTTCCATGTTGTTCAGTTATACCAATCATCTAT----CGTCAG 650
Query 655 CTAATAAAGATTGGTTTGT-----CC-GGTCCGGTCC--TCTT-TT--GTACCATATGTA 703
||||||||||||||||||| || |||||||||| |||| || |||||| |||||
Sbjct 651 CTAATAAAGATTGGTTTGTGTGGTCCTGGTCCGGTCCGGTCTTCTTTTGTACCACATGTA 710
Query 704 T--T--A--CGTGGATTTTTATGATGGAATAATAAAAATGCAATGCTACGGCTTGCACTT 757
| | | ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 711 TAATGTATGCGTGGATTTTTATAATGGAATAAGAAAAATGCAATGCTACGGCTTGCACTT 770
Query 758 GCTTTGTTTGCT 769
||||||||||||
Sbjct 771 GCTTTGTTTGCT 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5