BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491309
Length=539
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 808 0.0
AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 571 2e-162
> AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:16181012-16181776 FORWARD LENGTH=765
Length=765
Score = 808 bits (437), Expect = 0.0
Identities = 506/540 (94%), Gaps = 2/540 (0%)
Strand=Plus/Plus
Query 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 50 AAAAATGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109
Query 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCCAAAAGACTACCTCGCTGTACACAA 120
||||||||||||||||||||||||||||||| ||| | |||||||||| | |||||||||
Sbjct 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169
Query 121 CCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCGATA 180
|| |||||||||| ||||| |||||||||||||||||||||||||||| || || |||||
Sbjct 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229
Query 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCAAACACTCAAACTCACG 240
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289
Query 241 CGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349
Query 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409
Query 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469
Query 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTTTCCTCCTGGTAA 480
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529
Query 481 TATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGACGAATA-AAACTTGTCCA 539
| ||||||| ||| ||||||||||| | ||||||||||| |||||| | |||||||||||
Sbjct 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588
> AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:9128110-9128610 REVERSE LENGTH=501
Length=501
Score = 571 bits (309), Expect = 2e-162
Identities = 444/508 (87%), Gaps = 14/508 (3%)
Strand=Plus/Plus
Query 5 ATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATT-GGCGT-TAGCTCTTGTCCTAG 62
|||||||||||||| ||||||||||| ||| |||| || || | ||| |||| ||||||
Sbjct 1 ATGAAGATGTTTAAATCTCCTCAAACACTAATACT-TTCGG-TTATAGTTCTTTTCCTAG 58
Query 63 CTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCCAAAAGACTACCTCGCTGTACACAACC 122
||||||||||||| ||||||||||||||| |||| |||||||||||| || ||||||||
Sbjct 59 CTTTTGCAGTTCCTCTGAAAGCCCAAGACCAGCCACAAGACTACCTCGATGAACACAACC 118
Query 123 GTGCTCGAGA-CCACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCGATAC 181
|||||||| | ||| ||||||||||||| ||| ||||||||||||||||||| || ||||
Sbjct 119 GTGCTCGA-ACCCAAGTTGGTGTGCCTCCTATGAAATGGCATGCGGGGGCGGAGCAATAC 177
Query 182 GCCTGGAACTATGCTCAA-ATAAGAAAGCGG-GACTGTCGTCTCAAACACTCAAACTCAC 239
|||||||||||||||||| | ||||||| || |||||| |||||| ||||| ||||||
Sbjct 178 GCCTGGAACTATGCTCAACA-AAGAAAG-GGAGACTGTAGTCTCACTCACTCCAACTCAA 235
Query 240 GCGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAG 299
|||| |||||||||||||||||||||||| | |||| | |||| ||||||| ||||
Sbjct 236 ATGGGCTTTACGGTGAAAACTTGGCATGGAGCGGAGGTGCTTTGTCTGGAGCTGAGGCAG 295
Query 300 TGAGATTGTGGGTCAAAGAGAAGTCTGACTACT-TCCACAAATCGAACACATGTCGTGCT 358
||| |||||||||||| |||||||||||||| | || || |||||||| ||| ||| |
Sbjct 296 TGAAATTGTGGGTCAACGAGAAGTCTGACTA-TATCTACGCTTCGAACACTTGTAGTGAT 354
Query 359 GGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGT 418
|||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||
Sbjct 355 GGAAAACAATGTGGTCATTACACTCAAGTTGTGTGGCGAACCTCGGAGTGGGTTGGGTGT 414
Query 419 GCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTTTCCTCCTGGT 478
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 415 GCCAAAGTAAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTATCCACCTGGT 474
Query 479 AAT-ATTAGGGGCCGTTGGCCTTACTAA 505
||| || |||||||||||||||||||||
Sbjct 475 AATTAT-AGGGGCCGTTGGCCTTACTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25820351558
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5