BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491311
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1291 0.0
> AT4G33690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has
543 Blast hits to 512 proteins in 106 species: Archae - 0;
Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses
- 0; Other Eukaryotes - 136 (source: NCBI BLink). | chr4:16174818-16176253
FORWARD LENGTH=977
Length=977
Score = 1291 bits (699), Expect = 0.0
Identities = 842/907 (93%), Gaps = 26/907 (3%)
Strand=Plus/Plus
Query 26 CGATTCCGTGAAGCTGCTACTTTGATATCTG-A--T---TCAATTCGATTTCGTGATGGA 79
||||| |||||||||||||| | |||||||| | | |||||||||||||||||||||
Sbjct 67 CGATTTCGTGAAGCTGCTAC-TAGATATCTGTATCTGAGTCAATTCGATTTCGTGATGGA 125
Query 80 TCTGGAAACTGAAAATCGAATAGCTTCGATTCTTTTAAGAGAAGCAGCAGAATTGAGGAG 139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 126 TCTGGAAACTGAAAATCGAATAGCTTCCATTCTTTTAAGAGAAGCAGCAGAATTGAGGAG 185
Query 140 ACAAGCTGAGAAAGAAGGCGTCAGAGCATATCTTGAGAAGCCTAATGTAAGACATCGACC 199
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 186 ACAAGCTGAGAAAGATGGCGTCAGAGCATATCTTGAGAAGCCTAATGTAAGGCATCGACC 245
Query 200 TAACTCTAGATTTCTCACGGCTACTGTGCTTGGTGTTCAGCAAGCAAACAAAGCTGTGGA 259
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 246 TAACTCTAGATTTCTCACTGCTACAGTTCTTGGTGTTCAGCAAGCAAACAAAGCTGTGGA 305
Query 260 AACCAATGAGATGTGGAGTCTTCGGAGTAAAGAGATTGAGTTTGATGAAAGGCTCAAAAG 319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 306 AACCAATGAGATGTGGAGTCTTCGGAGTAAAGAGATTGAGTTTGGTGAAAGGCTCAAAAG 365
Query 320 AAAATCAAGAGAAGAGAGCAGCAGTTGCCAAAGTGAGCAGAACAATAGGAGGGATTTTCT 379
|||||||||||| |||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 366 AAAATCAAGAGATGAGAGCAGCAATGGTCAAAGTGAGCAGAACAATAGGAGGGATTTT-T 424
Query 380 T-AAGAGATGTACTTCAGTTGATGAGAATGTTACTACTACTAGTTTATCACCCTCATCAA 438
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 TAAAGAGATGTACTTCAGTTGATGAGAATGTTACTACTACTAGTTTATCACCATCATCAA 484
Query 439 GCCGGAGCAGAAACAAAAGATGGCAATCAGA--A-GACGATGATGAAGGCTTAGGAGATG 495
|||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 485 GCCGGAGCAGAAGCAAAAGATGGCAATCAGAGGATGATGATGATGAAGGCTTAGGAGATG 544
Query 496 TCAAGGTTAAGACTTTTCTCCAATCAAGGGTCAAGCGTGGCAGAGGCTCTGTTGGTGCTA 555
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 545 TCGAGGTTAAGACTTTTCTCCAATCAAGGGTCAAGCGTGGCAGAGGTTCTGTTGGTGCTA 604
Query 556 GGATGGATGAACCATTACCCTGTCTTCCTGTGAAGGAACTGTCAAGAAATTCTGATACAG 615
|||||||||||| ||||||||||||||| || |||| ||||||||| |||||||||||
Sbjct 605 TGATGGATGAACCGCTACCCTGTCTTCCTGAGAGGGAATTGTCAAGAACTTCTGATACAG 664
Query 616 GAGATCGGAAGCTAGTGCTCCAGCCAGATCGATCACCTTTATTGAGACGTGGGACAGATT 675
||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||
Sbjct 665 GAGATCGGAAGCTAGTGATTCAGCCAGAGCGATCACCTTTATTGAGACGTAGGACAGATT 724
Query 676 CTTCTTCTTCCGATGAGGA-G--GTTCACAAATGTGCTCATagaaagagaaaggagcata 732
||||||||||||| ||||| | ||| ||||| | |||||||||||||||||||||||||
Sbjct 725 CTTCTTCTTCCGACGAGGAGGAAGTTTACAAACGGGCTCATAGAAAGAGAAAGGAGCATA 784
Query 733 agaagaaacttagtagtaagaaacacaagtcaaaagagaagaaaagggataggaagaaga 792
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AGAAGAAAC-T--TAGTAAGAAACACAAGTCAAAAGAGAAGAAAAGGGATAGGAAGAAGA 841
Query 793 gaaaaTATTGTAGGGACTAGATCTTCTTTTCCGGACAAAAAAT-ATTGCC--TTTACACC 849
|||||||| |||||||||||| || ||||||||| |||| | |||||| ||||||||
Sbjct 842 GAAAATATGGTAGGGACTAGA---TC-TTTCCGGAC-AAAAGTAATTGCCTTTTTACACC 896
Query 850 GGCAGTGATGTTGTATCCATAAGATGATCATATTTCATTAATTCTAGTATTCTTAAAATG 909
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 897 GGCAGTGATGTTGTATCCATAAGATGATCATATTTCATTAATTCTTGTATTAGTAAAATG 956
Query 910 CTAATAA 916
| |||||
Sbjct 957 CGAATAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5