BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491313
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33670.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1790 0.0
> AT4G33670.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr4:16169523-16171561 REVERSE LENGTH=1222
Length=1222
Score = 1790 bits (969), Expect = 0.0
Identities = 1073/1123 (96%), Gaps = 8/1123 (1%)
Strand=Plus/Plus
Query 31 ATCCTTTCCACAATGACGAAAATGGAGCTTCGACCTTTGGGTAACACTGGACTTAAGGTA 90
||||| || |||||||||||||| ||||||||| ||||||| ||||| || ||||||||
Sbjct 104 ATCCTATCAACAATGACGAAAATAGAGCTTCGAGCTTTGGGGAACACAGGGCTTAAGGTT 163
Query 91 AGCGCCGTTGGTTTCGGTGCCTCGCCGCTCGGAAGTGTCTTCGGTCCAGTCGCCGAAGAT 150
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 164 AGCGCCGTTGGTTTTGGTGCCTCTCCGCTCGGAAGTGTCTTCGGTCCAGTCGCCGAAGAT 223
Query 151 GATGCCGTCGCCACCATGCGCGAGGCTTTCCGTCTCGGTATCAACTTCTTCGACACCTCC 210
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GATGCCGTCGCCACCGTGCGCGAGGCTTTCCGTCTCGGTATCAACTTCTTCGACACCTCC 283
Query 211 CCGTATTATGGAGGAACACTGTCTGAGAAAATGCTTGGTAAGGGACTAAAGGCTTTGCAA 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CCGTATTATGGAGGAACACTGTCTGAGAAAATGCTTGGTAAGGGACTAAAGGCTTTGCAA 343
Query 271 GTCCCTAGAAGTGACTACATTGTGGCGACTAAGTGTGGTAGATATAAAGAAGGTTTTGAT 330
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 344 GTCCCTAGAAGTGACTACATTGTGGCTACTAAGTGTGGTAGATATAAAGAAGGTTTTGAT 403
Query 331 TTCAGTGCTGAGAGAGTAAGAAAGAGTATCGACGAGAGCTTGGAGAGGCTTCAGCTTGAT 390
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 404 TTCAGTGCTGAGAGAGTAAGAAAGAGTATTGACGAGAGCTTGGAGAGGCTTCAGCTTGAT 463
Query 391 TATGTTGACATACTTCATTGCCATGACATTGAGTTCGGGTCTCTTGATCAGATTGTGAGT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TATGTTGACATACTTCATTGCCATGACATTGAGTTCGGGTCTCTTGATCAGATTGTGAGT 523
Query 451 GAAACAATTCCTGCTCTTCAGAAACTGAAACAGGAGGGGAAGACCAGGTTCATTGGTATC 510
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 524 GAAACAATTCCTGCTCTTCAGAAACTGAAACAAGAGGGGAAGACCCGGTTCATTGGTATC 583
Query 511 ACTGGTCTTCCGTTAGATATTTTCACTTATGTTCTTGATCGAGTGCCTCCAGGGACAGTC 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 584 ACTGGTCTTCCGTTAGATATTTTCACTTATGTTCTTGATCGAGTGCCTCCAGGGACTGTC 643
Query 571 GATGTGATATTATCATACTGTCATTACGGCGTTAATGATTCGACGTTGCTGGATTTGCTA 630
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 644 GATGTGATATTGTCATACTGTCATTACGGCGTTAATGATTCGACGTTGCTGGATTTACTA 703
Query 631 CCTTACTTGAAGAGCAAAGGTGTGGGTGTGATAAGTGCGTCCCCATTGGCAATGGGTCTC 690
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 704 CCTTACTTGAAGAGCAAAGGTGTGGGTGTGATAAGTGCTTCTCCATTAGCAATGGGCCTC 763
Query 691 CTTACAGAACAAGGTCCTCCTGAATGGCACCCCGCTTCCCCTGAGCTCAAGACTGCATGC 750
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 764 CTTACAGAACAAGGTCCTCCTGAATGGCACCCTGCTTCCCCTGAGCTCAAGTCTGCAAGC 823
Query 751 AAAGCCGCAGTTTCTCACTGCAAATCAAAGGGTAAGAAGATCACAAAGTTAGCTCTGCAA 810
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 824 AAAGCCGCAGTTGCTCACTGCAAATCAAAGGGCAAGAAGATCACAAAGTTAGCTCTGCAA 883
Query 811 TACAGTTTAGCAAACAAGGAGATTTCATCAGTGTTGGTTGGGATGAGCTCTGTCTCGCAG 870
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 884 TACAGTTTAGCAAACAAGGAGATTTCGTCGGTGTTGGTTGGGATGAGCTCTGTCTCACAG 943
Query 871 GTAGAAGAAAATGTTGCAGCAGTTACAGAGCTTGAAAGTCTGGGGATGGATCAAGAAACT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GTAGAAGAAAATGTTGCAGCAGTTACAGAGCTTGAAAGTCTGGGGATGGATCAAGAAACT 1003
Query 931 CTGTCTGAGGTTGAAGCTATTTTAGAGCCTGTAAAGAATCTGACATGGCCAAGTGGAATC 990
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1004 CTGTCTGAGGTTGAAGCTATTCTCGAGCCTGTAAAGAATCTGACATGGCCAAGTGGAATC 1063
Query 991 CATCAGAACTAAAA-AAGCTCTTTGTGTTTCTGGGAAACTCTTGTCATGCTTCTTGTAAT 1049
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1064 CATCAGAACTAAAAGAAGCTCTTTGTGTTTCTGGTAAACTCTTGTCTTGCTTCTTGTAAT 1123
Query 1050 GTTTCGGTATTCGTTGT-GT--CATTGTGTTAATATATAAGAGTGTAAGTTTGGTTGGTA 1106
| || | ||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 1124 GCTTATGCATTCGTTGTTGTGTCATTGTGTTAATA-A---GAGTGTAAGTTTGGTTGGTA 1179
Query 1107 TGATTAATAAAATTTCTTAGATATCAAAATTAATCTGAACATC 1149
||||||||||| |||||||||||||||||| | || |||||||
Sbjct 1180 TGATTAATAAAGTTTCTTAGATATCAAAATCAGTCGGAACATC 1222
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 ACAAGTGTTGTCTTCTCGCGTCTCTCATCAA 31
|||||||||||||||||||||||||||||||
Sbjct 52 ACAAGTGTTGTCTTCTCGCGTCTCTCATCAA 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5