BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491314

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33660.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   418    2e-116


> AT4G33660.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16167286-16167951 
REVERSE LENGTH=544
Length=544

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 277/300 (92%), Gaps = 10/300 (3%)
 Strand=Plus/Plus

Query  31   TTTCTATTCAAAAACTATAGTGTTGAATCttttttttt-ttGCTTA-AATTCTCTGGCCA  88
            |||||||||||||||| |||| |||| | ||||||||| |||  || | |||||   |||
Sbjct  71   TTTCTATTCAAAAACTTTAGTTTTGAGT-TTTTTTTTTCTTG--TATACTTCTC--CCCA  125

Query  89   AAATATGAGCGATCCGAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG  148
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  AAATATGAGCGATCCCAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG  185

Query  149  TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTACCCTCCACCACCGCCACCGCCGCC  208
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  186  TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTATCCTCCACCACCGCCACCGCCTCC  245

Query  209  TCCACCACCAC-AGC--GAAAAGTTGGTTTTCTTGAAGGACTATTAGCGGCTCTGTGTTG  265
            ||| ||||||| | |  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  246  TCCTCCACCACCACCACGAAAAGTTGGTTTTCTTGAAGGACTATTAGCAGCTCTGTGTTG  305

Query  266  TTGCTGCTTGGTGGATGAATGTTGCTGCGACCCGACCATTATATGCATTGATTAAGTTTT  325
            ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  306  TTGCTGCTTGGTGGATGAATGTTGCTGTGACCCGACCATTATATGCTTTGATTAAGTTTT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5