BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491320
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33625.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1273 0.0
> AT4G33625.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS
InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15
(InterPro:IPR013714); Has 59 Blast hits to 59 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink). | chr4:16152926-16154722 REVERSE LENGTH=970
Length=970
Score = 1273 bits (689), Expect = 0.0
Identities = 760/794 (96%), Gaps = 5/794 (1%)
Strand=Plus/Plus
Query 83 TCACCGGGAAATCGGTTTCAGATGGATAGGCCTGAGGAAATCGAAGAATCCCCCGCCGGA 142
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 159 TCACCGGGAAATTGGTTTTAGATGGATAGGACTGAGGAAATCGAAGAATCCCCCGCCGGA 218
Query 143 CCTTCTTCCGGATCCGCGAAATTGAAGCTCGCAAACAGAACAGACCCTTTCCTTGTTGTT 202
||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 219 CCTTCTTCCGGATCCGCGAAATTGAAGCTCGGAAACAGAGCAGATCCTTTCCTTGTTGTT 278
Query 203 TGTAGATGCTTCAGCGTTGTTACCTCTCTCATCGCCATTCTCTGTGTTGTCGTTAATGTT 262
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 279 TGTAGATGCTTCAGCCTCGTTACCTCTCTCATCGCCATTCTCTGTGTTGTCGTTAACGTT 338
Query 263 CTCGCTGCCGTTCGCTCCTTCCGAGACAGCCACGATCTCTTCGATGGAATATTCCGGTGT 322
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 339 CTCGCTGCCGTTCGCTCCTTCCGTGACAGCCACGATCTCTTCGATGGAATATTCCGGTGT 398
Query 323 TATGCTGTGGTGATTGCTTGTTTTGTTGTTCTCGTTGAGACAGAATGGGGTTTCATTCTC 382
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 399 TATGCTGTGGTGATTGCTTGTTTTGTTGTTCTCGTTGAGACTGAATGGGGTTTCATTCTC 458
Query 383 AAATTTTCCAAGGTTCTTGAATTCTGGGCTGGTAGAGGAATGCTTCAGATTTTTGTTGCT 442
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 459 AAATTTTCCAAGGTTCTTGAATACTGGGCTGGTAGAGGAATGCTTCAAATTTTTGTTGCT 518
Query 443 GTGATGACAAGAGCTTTCCCTGATTATATGACTCAAAAGAAGGATCTCCTGCTTCTACAG 502
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 519 GTGATGACAAGAGCTTTCCCTGACTATATGACTCAAAAGAAGGATCTCCTGCTTCTACAG 578
Query 503 AACATCGCTAGCTACTTGCTTCTTGCTTGTGGTGTTATCTATGTCATTTCAGGAGTTCTC 562
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 579 AACATCGCAAGCTACTTGCTTCTTGCTTGTGGTGTTATCTATGTCATTTCTGGAGTTCTC 638
Query 563 TGCATCGGCTTTCTGAAGCGTGCTCGACAGCAGAAGGAAGTTTCAAGAGAACAAGCCGTC 622
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 639 TGCATCGGCTTTCTGAAGCGTGCTCGACAGCAAAAGGAAGTTTCAAGAGAACAAGCAGTC 698
Query 623 AAGGATCTTGAGGAGATAGCCCGACGCAAGGAAGAGTTGGAACAATTGCTCCTGGAGCAT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AAGGATCTTGAGGAGATAGCCCGACGCAAGGAAGAGTTGGAACAATTGCTCCTGGAGCAT 758
Query 683 CGGAGTAGAGATGACGACGTGTGAATGTGAATGGACGAC-A--TCTGTTTCTTTTTGTAT 739
| ||||||||| || |||||||||||||||||||||||| | || ||||||||||||||
Sbjct 759 CAGAGTAGAGACGAAGACGTGTGAATGTGAATGGACGACGACATCAGTTTCTTTTTGTAT 818
Query 740 TAAAGGATTGTGTGAGCTCTCTGTTTTCATCCTCCCACTTGGCTAATAACAGCAGATTCC 799
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 819 TAAAGCATTGTGTGAGCTCTCGGTTTTCATCCTCCCACTTGGATAATAACAGCAGATTCT 878
Query 800 TTTGTTTTTTGTGTGTTGAAAAACTAAGCTTTGATACTTGTCGTATAAGAGACAAGAGCA 859
|||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 879 TTTGTTTTTTGTCTGTTGAAAAACAAAGCTTTGATACTGGTCGTATAAGAGAC--GAGCA 936
Query 860 CTATTGAATATAAA 873
||||||||||||||
Sbjct 937 CTATTGAATATAAA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5