BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491323

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33610.1 | Symbols:  | glycine-rich protein | chr4:16146261-...   464    3e-130
  AT1G55990.1 | Symbols:  | glycine-rich protein | chr1:20942487-...   252    2e-66 


> AT4G33610.1 | Symbols:  | glycine-rich protein | chr4:16146261-16146993 
FORWARD LENGTH=733
Length=733

 Score =  464 bits (251),  Expect = 3e-130
 Identities = 360/408 (88%), Gaps = 25/408 (6%)
 Strand=Plus/Plus

Query  49   GGAATGGATGGGAGACTAGTCGGAAGAGAAGGAATGGACGGGAGATTAGTCGGAAGAGAA  108
            ||||||||||||||| |||| ||||||||||||||||| || | ||||||||||||||||
Sbjct  298  GGAATGGATGGGAGATTAGTTGGAAGAGAAGGAATGGATGGAATATTAGTCGGAAGAGAA  357

Query  109  GGAATTGTTGTCGGAAATGAAGGCAAAGTTGGCACTGGAGGCATT-CCAGTGGGAATTGT  167
            ||||||||||| |||||||||||||||||||||| |||||||||| || |||||||| ||
Sbjct  358  GGAATTGTTGTTGGAAATGAAGGCAAAGTTGGCATTGGAGGCATTGCC-GTGGGAATGGT  416

Query  168  TGGAAGATTTGGTTGTGGCAAAGCTGATGGCAATGGAAATGGAGACATTGCAGTGGGCAT  227
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  417  GGGAAGATTTGGTTGTGGCAAAGCTGATGGCATTGGAAATGGAGACATTGCAGTGGGCAT  476

Query  228  TGTGGGAAGAGTTGGTAAAGATGGTTGTGGCAACGTTGATGTCAATGGAGGTAGTCCCAT  287
            |||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct  477  TGTGGGGAGAGTTGGTAAAGACGGTTGTGGCAACGTCGATGGCAATGGAGGTAGTCCCAT  536

Query  288  TGTTGGGATTGGCAGATTTGG-A----A--------TT-T-GTTGGAGAAGGCGGCGTGA  332
            |||||| || ||||||||||| |    |        || | |||||||||||||||||||
Sbjct  537  TGTTGGAATAGGCAGATTTGGGATTTGAGGAAGAGGTTGTTGTTGGAGAAGGCGGCGTGA  596

Query  333  TGCTGAGCATGTGTTGATCATCATAGAGGAAGAGAGGCTCACTAAGAAA-GCAATGAGAA  391
             |||||||| |||||||||||||||||||||||||||| ||||| |||| |||||| | |
Sbjct  597  GGCTGAGCAAGTGTTGATCATCATAGAGGAAGAGAGGCACACTA-GAAAAGCAATGCGGA  655

Query  392  AGAGCTTGTATGATGCCATTGATCTGGGTGTG-TTGATGAATCTCTAA  438
            ||||||||||||||||||||  | ||  | || ||| |||||||||||
Sbjct  656  AGAGCTTGTATGATGCCATT--T-TGCTT-TGGTTG-TGAATCTCTAA  698


 Score =  121 bits (65),  Expect = 7e-27
 Identities = 73/77 (95%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  1    ATAATTCAAGGACTCGATGTAGCTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG  60
            ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  220  ATAGTTCAAGGACTCGAAGTAGTTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG  279

Query  61   AGACTAGTCGGAAGAGA  77
            ||||||||||| |||||
Sbjct  280  AGACTAGTCGGCAGAGA  296


> AT1G55990.1 | Symbols:  | glycine-rich protein | chr1:20942487-20942951 
REVERSE LENGTH=420
Length=420

 Score =  252 bits (136),  Expect = 2e-66
 Identities = 208/239 (87%), Gaps = 19/239 (8%)
 Strand=Plus/Plus

Query  42   GAAGA-ACGGAATGGATGGGAGACTAGTCGGAAGAGAAGGAATGGACGGGAGATTAGTCG  100
            ||||| | ||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct  74   GAAGAGAGGGAATGGATGGGAGATTAGTTGGAAGAGAAGGAATGGATGGGAGATTAGTCG  133

Query  101  GAAGAGAAGGAATTGTTGTCGGAAATGAAGGCAAAGTTGGCACTGGAGGCATTCCAGTGG  160
            |||||||||||||||| || |||||||||||||||||||||| ||    |   |  ||||
Sbjct  134  GAAGAGAAGGAATTGTAGTTGGAAATGAAGGCAAAGTTGGCATTG----C---C--GTGG  184

Query  161  GAATTGTTGGAAGATTTGGTTGTGGCAAAGCTGATGGCAATGGAAATGGAGACATTGCAG  220
            |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  185  GAATGGTGGGAAGATTTGGTTGTGGCAAAGCTGATGGCATTGGAAATGGAGACATTGCAG  244

Query  221  TGGGCATTGTGGGAAGAGTTGGTAAAGATGGTTGTGGCAACGTTGATGTCAATGGAGGT  279
            ||||||||||        | ||||||||||||||||||||||| |||| ||||||||||
Sbjct  245  TGGGCATTGT--------T-GGTAAAGATGGTTGTGGCAACGTCGATGGCAATGGAGGT  294


 Score =  176 bits (95),  Expect = 1e-43
 Identities = 117/127 (92%), Gaps = 3/127 (2%)
 Strand=Plus/Plus

Query  312  TTGTTGGAGAAGGCGGCGTGATGCTGAGCATGTGTTGATCATCATAGAGGAAGAGAGGCT  371
            ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||
Sbjct  297  TTGTTGGAGAAGGCGGCGTGAGGCTGAGCAAGTGTTGATCATCATTGAGGAAGAGACGCT  356

Query  372  CACTAAGAAAGCAATGAGAAAGAGCTTGTATGATGCCATTGATCTGGGTGTGTTGATGAA  431
            |||||||||||||||||||||||||||||||||||||||   | ||| ||||||||| ||
Sbjct  357  CACTAAGAAAGCAATGAGAAAGAGCTTGTATGATGCCATC--T-TGGATGTGTTGATAAA  413

Query  432  TCTCTAA  438
            |||||||
Sbjct  414  TCTCTAA  420


 Score =  121 bits (65),  Expect = 7e-27
 Identities = 73/77 (95%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  1   ATAATTCAAGGACTCGATGTAGCTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG  60
           ||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct  4   ATAGTTCAAGGACTCGAAGTAGTTGTAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG  63

Query  61  AGACTAGTCGGAAGAGA  77
           |||||||||||||||||
Sbjct  64  AGACTAGTCGGAAGAGA  80



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5