BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491324
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1146 0.0
AT4G33590.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 636 0.0
> AT4G33600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: 4 anthesis, C globular stage,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G33590.1);
Has 131 Blast hits to 131 proteins in 40 species: Archae
- 0; Bacteria - 9; Metazoa - 12; Fungi - 24; Plants - 58; Viruses
- 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr4:16144391-16145884
REVERSE LENGTH=1494
Length=1494
Score = 1146 bits (620), Expect = 0.0
Identities = 693/728 (95%), Gaps = 6/728 (1%)
Strand=Plus/Plus
Query 1 ATGACTAAACGCAGCGTTTCAAGGAGGCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCC 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGACTAAACGCAGCGTTTCAAGGAATCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCC 80
Query 61 TTGAACGTCTTGTGTCTTGTCGTCACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTGAACGTCTTGTGTCTTGTCGTCACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCAC 140
Query 121 ATTACCCAACAGCCCATTTTACTTCCTCCTTCACTATTCACATATCTGAAAGAACAACAA 180
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 ATTACCCAACAACCCATTTTACTTCCTCCTTCACTATTCACATATCTAAAAGAACAACAA 200
Query 181 CAAGAACCTGAACAAATAATATCTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGT 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CAAGAACCTGAACAAATAAAATCTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGT 260
Query 241 GAGTCGGTAACATTCCTTCCTCTGAAAGACCTTCGTTTTTCAAACAAACCACTCGAAGGT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 261 GAGTCGGTAACATTCCTTCCCCTGAAAGACCTTCGTTTTTCAAACAAACCACTTGAAGGT 320
Query 301 CATACTTGGTTTATGAGCTCTCTCTACGATAACCAAACAAAAGGTGAAGTTCAATATCAA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 321 CATACTTGGTTTATGAGCTCTCTCTACGATAACCAAACAAAAGGTGAGGTTCAATATCAA 380
Query 361 GAATTTCCTTCAGAATCTTCAAAAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAGCAT 420
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 381 GAATTTCCTTCGGAATCTTCGAAAGGAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCAT 440
Query 421 GATGGGTCATGGAACTACTATGCACTGGCTTGGCCTCAAGCTCTTCCGGTCAATGCCAGT 480
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 441 GATGGATCATGGAACTACTATGCACTGGCTTGGCCTCAAGCTCTTCCTGTCAATGCCAGT 500
Query 481 CTCCAGGAGGGATTGACATTTGTTTCCTATAATCATTAC-AGTTACGGTAACATGTGGCA 539
||||||||||||||||||||||| || |||||||||||| | ||||||||| ||||||||
Sbjct 501 CTCCAGGAGGGATTGACATTTGTCTCGTATAATCATTACGA-TTACGGTAATATGTGGCA 559
Query 540 TGGACTATCCGCCATGGTCCCGTTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAAGTCC 599
|||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||
Sbjct 560 TGGACTGTCCGCCATGGTCCCATTTGTTGCTTGGAGCTTAAGACACCAGTGCGAAAATCC 619
Query 600 TCAAAGGTGGGTTTTATACCATTGGGGAGAACTCAGGTTCAAGATGGGGAACTGGTTGAG 659
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 620 TCAAAGATGGGTTTTATACCATTGGGGAGAACTCAGGTTCAAGATGGGGAATTGGTTGAA 679
Query 660 TGAGATAATAACAGCTACTTACGGTCAGAACACCA-AATTTTTACGGTTT-GTTGATGAG 717
|||||||| ||||| ||||||||||||||||| | |||||||||||||| || ||| ||
Sbjct 680 CGAGATAATCACAGCGACTTACGGTCAGAACAC-AGAATTTTTACGGTTTCGT-GATAAG 737
Query 718 AACAAGCC 725
|||| |||
Sbjct 738 AACAGGCC 745
Score = 946 bits (512), Expect = 0.0
Identities = 596/636 (94%), Gaps = 7/636 (1%)
Strand=Plus/Plus
Query 729 GGAGAGAAGAATGGAAGCCTTTGATCTCATTAGATGCAAAGCGAGAAAATACTGTAACAT 788
||||||||||||||||| |||||||||||||||||||||||| ||| | || ||||||||
Sbjct 800 GGAGAGAAGAATGGAAGTCTTTGATCTCATTAGATGCAAAGCCAGACACTATTGTAACAT 859
Query 789 AAGCTTGTCCCAGACATCAGAATCGCGAATAGGTATGACATTGCTAATGAGAACCGGACC 848
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 860 AAGCTTGTCCGAGACATCAAAATCACGAATAGGTATGACATTGCTAATGAGAACCGGACC 919
Query 849 AAGATCGTTCAAGAATGAGTCAGCCGTGATTGATGTCTTTAAGAGGGAGTGTAAAAGA-G 907
|||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| | |
Sbjct 920 AAGATCATTCAAGAATGAGTCAGCCGTGATCGATATCTTTAAGAGAGAGTGTAAAA-ATG 978
Query 908 TTGAAGGGTGTGAATTGAAGGTTTCTTATTCAAATAATCTAACATTTTGTGAGCAAGTGG 967
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 979 TAGAAGGGTGTGAATTGAAAGTTTCTTATTCAAATAATCTAACATTCTGTGAGCAAGTGG 1038
Query 968 AGCTGATGAAAATGACTGATGTTTTAGTATCACCACATGGTGCACAGCTTACTAACTTGG 1027
||||||||| |||||| ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct 1039 AGCTGATGAGAATGACCGATGTGTTAGTATCACCACACGGTGCACAACTTACTAATTTGG 1098
Query 1028 TTCTAATGGATAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTG 1087
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTCTAATGGACAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTG 1158
Query 1088 CAGGAGTTGGTCAGCTTGTGTACCAATGGGGAGCTAGTTGGTCAGGAATGCGACACGAAG 1147
|||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||
Sbjct 1159 CAGGAGTTGGTCAGCTTGTGTACCAATGGGGAACTAGGTGGTCAGGAATGAGACATGAAG 1218
Query 1148 GCTCGTGGCATGATCCAGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGATGTA 1207
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GCTCGTGGCATGACCCGGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGATGTA 1278
Query 1208 TGTCG---GTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGG 1264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGTCGTCCGTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGG 1338
Query 1265 CGAAAAGTGTTTTGGGTAAGTT-AAGAGaaaaaaaGATGGAAAATGTTCTAGGACGCAAC 1323
| |||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||
Sbjct 1339 CAAAAAGTGTTTTGGGTAAGTTTAA-AGAAAGAAAGATGGCAAATGTTGTAGGACGCAAA 1397
Query 1324 CACAGTTATGGTTCGCTAGATGGATGTTGGTGTTGA 1359
||||||||||||||||||||||||||||||||||||
Sbjct 1398 CACAGTTATGGTTCGCTAGATGGATGTTGGTGTTGA 1433
> AT4G33590.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G33600.1);
Has 126 Blast hits to 126 proteins in 35 species: Archae -
0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses
- 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr4:16142497-16144023
REVERSE LENGTH=1527
Length=1527
Score = 636 bits (344), Expect = 0.0
Identities = 586/700 (84%), Gaps = 28/700 (4%)
Strand=Plus/Plus
Query 25 AGGCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCCTTGAACGTCTTGTGTCTTGTCGTC 84
|||||||||||||||||| |||| | |||||||| ||||||||||||||| || || |||
Sbjct 66 AGGCTAGTTACTTGCTTATCCTCTCTTAAGTTCTACTTGAACGTCTTGTGCCTCGTTGTC 125
Query 85 ACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCACATTACCCAACAG--CCCATTTTAC 142
|| |||||||||||||| |||||||| |||||||| ||||| |||| | | | ||| ||
Sbjct 126 ACTGTTTTTGTTCTTCTCCAAATCTGTTCATTTCAAATTACTCAAC-GTTCTC-TTTCAC 183
Query 143 TTCCTCCTTCACTATTCACATATCTGAAAGAACAACAACAAGAACCTGAACAAATAATAT 202
| |||||| |||| || || ||||| | | ||| || | | | || | | | | |||
Sbjct 184 TCCCTCCTGCACTCTTGACGTATCT----G-A-AAC-AC-A-ATCATG-A-AGA-AGTAT 231
Query 203 CTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGTGAGTCGGTAACATTCCTTCCTC 262
| |||||| ||||||||| |||||||||||| |||||||| || || ||||||||||| |
Sbjct 232 CAGAGAACAAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCCGTGACATTCCTTCCAC 291
Query 263 TGAAAGACCT-TCGTTTTTCAAACAAACCACTCGAAGGTCATACTTGGTTTATGAGCTCT 321
| ||||| || ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 292 TCAAAGA-CTATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCT 350
Query 322 CTCTACGATAACCAAACAAAAGGTGAAGTTCAATATCAAGAATTTCCTTCAGAATCTTCA 381
||||| ||||| ||||| |||||||| | ||| |||||||||||||||||||| |||||
Sbjct 351 CTCTATGATAATCAAACCAAAGGTGAGGCTCAGTATCAAGAATTTCCTTCAGATTCTTCG 410
Query 382 AAAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTAT 441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 411 AAAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAACATGATGGGTCATGGAACTCCTAC 470
Query 442 GCACTGGCTTGGCCTCAAGCTCTTCCGGTCAATGCCAGTCTCCAGGAGGGATTGACATTT 501
|| |||||||||||| |||||||||| |||||||| ||| ||||| || ||||| |||
Sbjct 471 GCGCTGGCTTGGCCTGAAGCTCTTCCTACCAATGCCATTCTTCAGGATGGCTTGACGTTT 530
Query 502 GTTTCCTATAATCATTAC-AGTTACGGTAACATGTGGCATGGACTATCCGCCA-TGGTCC 559
|| || || ||||| || | ||| |||||| |||||||||||||| | || | | || |
Sbjct 531 GTCTCTTACAATCAATATGA-TTATGGTAACTTGTGGCATGGACTAACGGC-AGTAGTTC 588
Query 560 CGTTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAA-GTCCTCAAAGGTGGGTTTTATAC 618
| ||| ||||||||||||||||||| ||||| |||| | ||||||| ||||||||||||
Sbjct 589 CATTTATTGCTTGGAGCTTAAGAAATCAATGTGAAAAG-CCTCAAAAATGGGTTTTATAC 647
Query 619 CATTGGGGAGAACTCAGGTTCAAGA-TGGGGAACTGGTTGAGTGAGATAATAACAGCTAC 677
|| ||||||||||| |||||| || ||||| | ||| |||| |||||| | ||||| ||
Sbjct 648 CACTGGGGAGAACTAAGGTTCG-GAATGGGGCATTGGCTGAGCGAGATAGTCACAGCCAC 706
Query 678 TTACGGTCA-GAACACCAAATTTTTACGGTTTGTTGATGA 716
||||||||| |||| | | ||||||||||||||||||||
Sbjct 707 TTACGGTCAAGAAC-CGGACTTTTTACGGTTTGTTGATGA 745
Score = 588 bits (318), Expect = 5e-167
Identities = 484/564 (86%), Gaps = 12/564 (2%)
Strand=Plus/Plus
Query 729 GGAGAGAAGAATGGAAGCCTTTGATCTCATTAGATGCAAAGCGAGAAAATACTGTAACAT 788
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 809 GGAGAGAAGAATGGAAGCTTTTGATCTCATTAGATGCAAAGCGAGGAATTACTGTAATAT 868
Query 789 AAGCTTGTCCCAGACATCAGAATCGCGAATAGGTATGACATTGCTAATGAGAACCGGA-C 847
|||| || | ||||| || ||||||| ||||||||||| ||| ||||||||||| |
Sbjct 869 CAGCTCATCTGTGGCATCAAAACCGCGAATCGGTATGACATTACTATTGAGAACCGGAGC 928
Query 848 CAAGATCGTTCAAG-AATGAGTCAGCCGTGATTGATGTCTTTAAGAGGGAGTGTAAAAGA 906
| ||||| ||| || ||||| ||| ||||||||||||||||||| |||||||| |||
Sbjct 929 C-AGATCTTTC-AGAAATGAATCAATGGTGATTGATGTCTTTAAGAAAGAGTGTAAGAGA 986
Query 907 GTTGAAGGGTGTG-AATTGAAG-GTTTCTTATTCAAATAATCTAACATTTTGTGAGCAAG 964
|| || ||||||| |||| || ||||| ||||| ||||||||| |||||||||||||||
Sbjct 987 GTAGATGGGTGTGAAATT--AGTGTTTCATATTCGAATAATCTATCATTTTGTGAGCAAG 1044
Query 965 TGGAGCTGATGAA-AATGACTGATGTTTTAGTATCACCACATGGTGCACAGCTTACTAAC 1023
||||||| ||||| || ||| ||||| ||||| ||||| || |||||||| || ||||||
Sbjct 1045 TGGAGCTAATGAAGAA-GACCGATGTGTTAGTGTCACCGCACGGTGCACAACTCACTAAC 1103
Query 1024 TTGGTTCTAATGGATAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAG 1083
||| |||||||||||| ||||||||| || ||||| ||| |||| |||||||||| ||||
Sbjct 1104 TTGTTTCTAATGGATAAAAATAGTAGTGTAATGGAGTTTTTCCCCAAAGGATGGCTTAAG 1163
Query 1084 CTTGCAGGAGTTGGTCAGCTTGTGTACCAATGGGGAGCTAGTTGGTCAGGAATGCGACAC 1143
|||||||||||||| |||||||||| |||||||||||||| ||||||||| ||| |||||
Sbjct 1164 CTTGCAGGAGTTGGCCAGCTTGTGTTCCAATGGGGAGCTAATTGGTCAGGGATGAGACAC 1223
Query 1144 GAAGGCTCGTGGCATGATCCAGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGA 1203
|||||||| ||||| || || | ||| ||||||||||| || |||||||| || |||||
Sbjct 1224 GAAGGCTCTTGGCACGACCCGGTTGGCGAAATATGTCAATTCCCCGATACAGACAGGCGG 1283
Query 1204 TGTATGTCGGTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGG 1263
|||||||| |||| ||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1284 TGTATGTCCATCTACAAGAACGCTATGATTGGATACAATGAGACTTATTTTGGCGAGTGG 1343
Query 1264 GCGAA-AAGTGTTTTGGGTAAGTT 1286
|| || ||| ||||||||||||||
Sbjct 1344 GC-AAGAAGAGTTTTGGGTAAGTT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5