BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491325
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33590.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2296 0.0
AT4G33600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1362 0.0
> AT4G33590.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G33600.1);
Has 126 Blast hits to 126 proteins in 35 species: Archae -
0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses
- 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr4:16142497-16144023
REVERSE LENGTH=1527
Length=1527
Score = 2296 bits (1243), Expect = 0.0
Identities = 1435/1529 (94%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 1 AAACTAAACTGATTCTGCTTCACTCTATTTGATTCATAATGACAACTAAAGCTAGTGCTT 60
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 AAACTAAACAGATTCTGCCTCACTCTATTTGATTCACAATGACAACTAAAGCTAGTGTTT 60
Query 61 GGCGAAGGCTAGTTACTTGCTTATCCTCCCTTAAGTTCTACTTGAACGTCTTGTGCCTCG 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GGCGAAGGCTAGTTACTTGCTTATCCTCTCTTAAGTTCTACTTGAACGTCTTGTGCCTCG 120
Query 121 TTGTCACTGGTTTTGTTCTTCTCCAACTCTGTTCATTTCAAATTACTCAACGTTCTCTTT 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TTGTCACTGTTTTTGTTCTTCTCCAAATCTGTTCATTTCAAATTACTCAACGTTCTCTTT 180
Query 181 CACTCCCTCCGGCACTCTTGACGTATCTGAGACACCGA-CCTGAACAATTATCCGAGAAC 239
|||||||||| ||||||||||||||||||| ||| | | | |||| || |||| ||||||
Sbjct 181 CACTCCCTCCTGCACTCTTGACGTATCTGAAACA-CAATCATGAAGAAGTATCAGAGAAC 239
Query 240 AAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCGGTGACATTCCTTCCACTCAAAGAC 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 AAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCCGTGACATTCCTTCCACTCAAAGAC 299
Query 300 TATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCTATGAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCTATGAT 359
Query 360 AACCAAACCAAAGGTGAGGCGCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAGGAAGG 419
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCAAACCAAAGGTGAGGCTCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAGGAAGG 419
Query 420 CTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTACGTC-CTGGC 478
|||||||| ||||||||||||||||| ||||||||||||||||||| ||||| | |||||
Sbjct 420 CTTTTGTGTTTGAAAGGGGTTGATGAACATGATGGGTCATGGAACTCCTACG-CGCTGGC 478
Query 479 TTGGCCTGAAGCTCTTCCAACCAATGCCATTCTTCAGGAGGGCTTGACGTTTGTTTCTTA 538
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 479 TTGGCCTGAAGCTCTTCCTACCAATGCCATTCTTCAGGATGGCTTGACGTTTGTCTCTTA 538
Query 539 CAATCAATATGATTATGGTAACTTGTGGCATGGACTAACGGCAGCAGTCCCATTTGTTGC 598
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 539 CAATCAATATGATTATGGTAACTTGTGGCATGGACTAACGGCAGTAGTTCCATTTATTGC 598
Query 599 TTGGAGCTTAAGAAACCAATGCGAAAAGCCTCAAAAATGGGTTTTATACCACTGGGGAGA 658
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGGAGCTTAAGAAATCAATGTGAAAAGCCTCAAAAATGGGTTTTATACCACTGGGGAGA 658
Query 659 ACTAAGGTTCGGGATGGGGCACTGGTTGAGCGAGATAATCACATCGATTTACGGTCAAGC 718
|||||||||||| |||||||| ||| ||||||||||| ||||| | | |||||||||||
Sbjct 659 ACTAAGGTTCGGAATGGGGCATTGGCTGAGCGAGATAGTCACAGCCACTTACGGTCAAGA 718
Query 719 ACCAGACTTTTTACAGTTTGTTGATCAGGATAAGCCGGTCTGTTTCGAGAAGGCGGTTGT 778
||| |||||||||| |||||||||| | |||||||| || ||||||||||||||||||||
Sbjct 719 ACCGGACTTTTTACGGTTTGTTGATGATGATAAGCCTGTTTGTTTCGAGAAGGCGGTTGT 778
Query 779 TATGAGACACAATGAAGGTGGAATGTCAAGGGAGAGAAGAATAGAGGTTTTTGATCTCAT 838
||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 779 TATGAGACATAATGAAGGTGGAATGTCAAGGGAGAGAAGAATGGAAGCTTTTGATCTCAT 838
Query 839 TAGATGCAAAGCGAGGAACTACTGTAATATCAGCTCATCGGAGACATCCAAACCGAGAAT 898
|||||||||||||||||| |||||||||||||||||||| | | |||| |||||| ||||
Sbjct 839 TAGATGCAAAGCGAGGAATTACTGTAATATCAGCTCATCTGTGGCATCAAAACCGCGAAT 898
Query 899 CGGTATGACATTGCTATTGAGAACTGGAGCCAGATCTTTCAGAAATGAGTCAGTGGTGAT 958
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 899 CGGTATGACATTACTATTGAGAACCGGAGCCAGATCTTTCAGAAATGAATCAATGGTGAT 958
Query 959 TGATGTATTTAAGAGAGAGTGTAAGAGAGTAGATGGGTGTGAACTTAATGTTTCATATTC 1018
|||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 959 TGATGTCTTTAAGAAAGAGTGTAAGAGAGTAGATGGGTGTGAAATTAGTGTTTCATATTC 1018
Query 1019 GAATAATCTAACATTTTGTGAGCAAGTGGAGCTAATGAAGAAGACCGATGTGTTAGTATC 1078
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 GAATAATCTATCATTTTGTGAGCAAGTGGAGCTAATGAAGAAGACCGATGTGTTAGTGTC 1078
Query 1079 ACCACACGGTGCACAACTCACTAACTTGTTTCTAATGGATAAAAATAGTAGTGTAATGGA 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACCGCACGGTGCACAACTCACTAACTTGTTTCTAATGGATAAAAATAGTAGTGTAATGGA 1138
Query 1139 GTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCAGCTTGTATTCCAATGGGG 1198
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 GTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCAGCTTGTGTTCCAATGGGG 1198
Query 1199 AGCTAATTGGTCAGGGATGAGACATGAAGGCTCTTGGCATGACCCGGTGGGCGAAATATG 1258
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1199 AGCTAATTGGTCAGGGATGAGACACGAAGGCTCTTGGCACGACCCGGTTGGCGAAATATG 1258
Query 1259 TCAATTCCCCTATACGGATAGGCGATGTATGTCGATCTATAAGAACGCTAAGATCGGATA 1318
|||||||||| |||| || ||||| |||||||| ||||| |||||||||| ||| |||||
Sbjct 1259 TCAATTCCCCGATACAGACAGGCGGTGTATGTCCATCTACAAGAACGCTATGATTGGATA 1318
Query 1319 CAATGAGACTTATTTTGGTGAGTGGGCAAGAAGAGTTTTGCGTAAGTTTAGCATAAGAGA 1378
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 CAATGAGACTTATTTTGGCGAGTGGGCAAGAAGAGTTTTGGGTAAGTTTAGCATAAGAGA 1378
Query 1379 GATGAAAGAGCTAGCAGAGTGCAACCACGGTAATAGTTCG-T-T-AGATGTATGTAGTTG 1435
|||||||||||| ||||||||||||||| |||||||||| | | |||||||||||||||
Sbjct 1379 GATGAAAGAGCTTGCAGAGTGCAACCACAGTAATAGTTCAATATTAGATGTATGTAGTTG 1438
Query 1436 ATATTCAATGTGAAGTCTACATTATATCCATCTGACAATTTGATGAGGCATGGTCAGTTC 1495
||||||||||| || ||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 1439 ATATTCAATGTAAAATCTACATTATAACCATATGACAATTTGATGAGGCAGGGTCAGTTC 1498
Query 1496 TAAATCTTATGGATATGTTTTGTTGATAC 1524
||| |||||||||| ||||||||||||||
Sbjct 1499 TAAGTCTTATGGATTTGTTTTGTTGATAC 1527
> AT4G33600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: 4 anthesis, C globular stage,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G33590.1);
Has 131 Blast hits to 131 proteins in 40 species: Archae
- 0; Bacteria - 9; Metazoa - 12; Fungi - 24; Plants - 58; Viruses
- 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr4:16144391-16145884
REVERSE LENGTH=1494
Length=1494
Score = 1362 bits (737), Expect = 0.0
Identities = 1142/1332 (86%), Gaps = 49/1332 (4%)
Strand=Plus/Plus
Query 69 CTAGTTACTTGCTTATCCTCCCTTAAGTTCTACTTGAACGTCTTGTGCCTCGTTGTCACT 128
||||||||||||||| |||||| |||||||| ||||||||||||||| || || |||||
Sbjct 48 CTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCCTTGAACGTCTTGTGTCTTGTCGTCACA 107
Query 129 GGTTTTGTTCTTCTCCAACTCTGTTCATTTCAAATTACTCAACGTTCTC-TTTCACTCCC 187
| |||||||||||| ||| |||| |||||||| ||||| |||| | | ||| ||| ||
Sbjct 108 GTTTTTGTTCTTCTTCAAATCTGGTCATTTCACATTACCCAAC-AACCCATTTTACTTCC 166
Query 188 TCCGGCACTCTTGACGTATCT--GAG-AC-AC--C--G-ACCTGAAC-AAT--TATCCGA 235
||| |||| || || ||||| || || || | | |||||||| ||| ||| ||
Sbjct 167 TCCTTCACTATTCACATATCTAAAAGAACAACAACAAGAACCTGAACAAATAAAATCTGA 226
Query 236 GAACAAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCGGTGACATTCCTTCCACTCAA 295
|||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||| || ||
Sbjct 227 GAACGAGACGGCTTACTTGGTGGAGAAACTACGTGAGTCGGTAACATTCCTTCCCCTGAA 286
Query 296 AGA-CTATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCT 354
||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 287 AGACCT-TCGTTTTTCAAACAAACCACTTGAAGGTCATACTTGGTTTATGAGCTCTCTCT 345
Query 355 ATGATAACCAAACCAAAGGTGAGGCGCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAG 414
| ||||||||||| |||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 346 ACGATAACCAAACAAAAGGTGAGGTTCAATATCAAGAATTTCCTTCGGAATCTTCGAAAG 405
Query 415 GAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTACGTC- 473
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 406 GAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGATCATGGAACTACTATG-CA 464
Query 474 CTGGCTTGGCCTGAAGCTCTTCCAACCAATGCCATTCTTCAGGAGGGCTTGACGTTTGTT 533
|||||||||||| |||||||||| |||||||| ||| |||||||| ||||| |||||
Sbjct 465 CTGGCTTGGCCTCAAGCTCTTCCTGTCAATGCCAGTCTCCAGGAGGGATTGACATTTGTC 524
Query 534 TCTTACAATCAATATGATTATGGTAACT-TGTGGCATGGACTAACGGCAGCA-G-TCCCA 590
|| || ||||| || ||||| ||||| | ||||||||||||| | || || | |||||
Sbjct 525 TCGTATAATCATTACGATTACGGTAA-TATGTGGCATGGACTGTCCGC--CATGGTCCCA 581
Query 591 TTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAAAGCCTCAAAAATGGGTTTTATACCAC 650
||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||
Sbjct 582 TTTGTTGCTTGGAGCTTAAGACACCAGTGCGAAAATCCTCAAAGATGGGTTTTATACCAT 641
Query 651 TGGGGAGAACTAAGGTTCGGGATGGGGCACTGGTTGAGCGAGATAATCACATCGATTTAC 710
||||||||||| |||||| ||||||| | ||||||| ||||||||||||| ||| ||||
Sbjct 642 TGGGGAGAACTCAGGTTCAAGATGGGGAATTGGTTGAACGAGATAATCACAGCGACTTAC 701
Query 711 GGTCA-AGCACCAGACTTTTTACAGTTT-GTTGATCAGGATAAGCCGGTCTG-TTTCGAG 767
||||| | ||| ||| ||||||| |||| || ||| || | | |||||| || ||| |||
Sbjct 702 GGTCAGAACAC-AGAATTTTTACGGTTTCGT-GATAAGAACAGGCCGGTTTGCTTT-GAG 758
Query 768 AAGGCGGTTGTTATGAGACACAATGAAGGTGGAATGTCAAGGGAGAGAAGAATAGAGGTT 827
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 759 AAGGCGGTTGTTATGAGACATAATGAAGGTGGAATGTCAAGGGAGAGAAGAATGGAAGTC 818
Query 828 TTTGATCTCATTAGATGCAAAGCGAGGA-ACTACTGTAATATCAGCTCATCGGAGACATC 886
||||||||||||||||||||||| || | |||| ||||| || |||| || ||||||||
Sbjct 819 TTTGATCTCATTAGATGCAAAGCCAG-ACACTATTGTAACATAAGCTTGTCCGAGACATC 877
Query 887 CAAACCGA-GAATCGGTATGACATTGCTATTGAGAACTGGAGCCA-GATCTTTCA-GAAA 943
||| | | |||| ||||||||||||||| ||||||| ||| ||| |||| |||| |||
Sbjct 878 AAAATC-ACGAATAGGTATGACATTGCTAATGAGAACCGGA-CCAAGATCATTCAAGAA- 934
Query 944 TGAGTCAGTGGTGATTGATGTATTTAAGAGAGAGTGTAAGAGA-GTAGATGGGTGTGAAC 1002
|||||||| ||||| ||| | ||||||||||||||||| | | ||||| |||||||||
Sbjct 935 TGAGTCAGCCGTGATCGATATCTTTAAGAGAGAGTGTAAAA-ATGTAGAAGGGTGTGAA- 992
Query 1003 TT-AATGTTTCATATTCGAATAATCTAACATTTTGTGAGCAAGTGGAGCTAATGAAGAA- 1060
|| || ||||| ||||| |||||||||||||| ||||||||||||||||| |||| |||
Sbjct 993 TTGAAAGTTTCTTATTCAAATAATCTAACATTCTGTGAGCAAGTGGAGCTGATGA-GAAT 1051
Query 1061 GACCGATGTGTTAGTATCACCACACGGTGCACAACTCACTAACTTGTTTCTAATGGATAA 1120
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
Sbjct 1052 GACCGATGTGTTAGTATCACCACACGGTGCACAACTTACTAATTTGGTTCTAATGGACAG 1111
Query 1121 AAATAGTAGTGTAATGGAGTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCA 1180
||||||||| || ||||| ||| |||| |||||||||| |||||||||||||||||| ||
Sbjct 1112 AAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTGCAGGAGTTGGTCA 1171
Query 1181 GCTTGTATTCCAATGGGGAGCTAATTGGTCAGGGATGAGACATGAAGGCTCTTGGCATGA 1240
|||||| | |||||||||| ||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1172 GCTTGTGTACCAATGGGGAACTAGGTGGTCAGGAATGAGACATGAAGGCTCGTGGCATGA 1231
Query 1241 CCCGG-TGGGCGAAATATGTCAATTCCCCTATACGGATAGGCGATGTATGTCGA---TCT 1296
||||| |||| ||||||||||| || ||| |||| |||||||||||||||||| |||
Sbjct 1232 CCCGGATGGG-GAAATATGTCAGTTTCCCGATACTGATAGGCGATGTATGTCGTCCGTCT 1290
Query 1297 ATAAGAACGCTAAGATCGGATACAATGAGACTTATTTTGGTGAGTGGGCAAGAAGAGTTT 1356
||||||||| || ||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1291 ATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGGCAAAAAGTGTTT 1350
Query 1357 TGCGTAAGTTTA 1368
|| |||||||||
Sbjct 1351 TGGGTAAGTTTA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5