BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491329

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33560.1 | Symbols:  | Wound-responsive family protein | chr...   499    7e-141


> AT4G33560.1 | Symbols:  | Wound-responsive family protein | chr4:16135400-16135914 
FORWARD LENGTH=515
Length=515

 Score =  499 bits (270),  Expect = 7e-141
 Identities = 357/397 (90%), Gaps = 14/397 (4%)
 Strand=Plus/Plus

Query  1    ACATTGTCCAAAGATCAATACACACTGTTTTAAG-AGAA-TT----AG-AAAAG-AAAAA  52
            |||||||||||||||||||||||||||||||||| |||| ||    || ||||| |||||
Sbjct  1    ACATTGTCCAAAGATCAATACACACTGTTTTAAGAAGAATTTGAAAAGAAAAAGAAAAAA  60

Query  53   AGAAGATGAACGCCGGAAAGCAAGCTTCGTGGGCGGTGGCGACGGCGATTGCAGCCGTGG  112
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  61   AGAAGATGAATGCCGGAAAGCAAGCTTCGTGGGCGGTGGCGACGGCGATCGCAGCCGTGG  120

Query  113  AAGTACTAAAGGACCAAGGCGTTGCTCGATGGAACTACCCTCTCCGCTTACTCCACAAAG  172
            |||| ||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct  121  AAGTGCTAAAAGACCAAGGCGTTGCTCGGTGGAACTACCTTTTCCGCTTACTCCACAAAG  180

Query  173  AAGCAATGGCTCGTGTCCGTACCATCACAGTCCCATCTCCTCACTCTCCTCGTACGTCTT  232
            ||||||||||||| ||||||||||| ||||||||||||| || |||||||| ||||||||
Sbjct  181  AAGCAATGGCTCGCGTCCGTACCATTACAGTCCCATCTCGTCCCTCTCCTCCTACGTCTT  240

Query  233  CAGATTCGACCGA-TTTCATCAGATCCAAACCCATGACGACTACACCCTTTGAGAAATCT  291
            ||  ||||  | | || |||||||||||||||  || | || ||||||||||||| ||| 
Sbjct  241  CATCTTCG-GCTACTTCCATCAGATCCAAACCTTTGTCCACCACACCCTTTGAGACATCC  299

Query  292  TTTCAGAAAGCTATGGGTCTTAGCTGCTTTGGTCCCACCACCGTTAGATTCTAGATCTCT  351
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TTTGAGAAAGCTATGGGTCTTAGCTGCTTTGGTCCCACCACCGTTAGATTCTAGATCTCT  359

Query  352  ATGTACTCTGTTG-A---ACGCAAATCAGAATGTGCA  384
            ||||||| ||||| |   |||||||||||||||||||
Sbjct  360  ATGTACTGTGTTGTATGTACGCAAATCAGAATGTGCA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5