BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491340
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2104 0.0
> AT4G33480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3727 (InterPro:IPR022203);
Has 348 Blast hits to 348 proteins in 78 species: Archae
- 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183;
Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
| chr4:16105611-16108646 REVERSE LENGTH=1353
Length=1353
Score = 2104 bits (1139), Expect = 0.0
Identities = 1286/1354 (95%), Gaps = 22/1354 (2%)
Strand=Plus/Plus
Query 1 AAGTAGAAATTTAGTTTTGACTGTTGTTAAGTGCCTTCTTACTCG-AAAAATCACAACTT 59
||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 1 AAGTAGAAATTTAGTTTTGACTGTTGTGAAGTTTCTTCTTACTCGAAAAAATCACAACTT 60
Query 60 TACCACAAATATCTCCGTTGCCGGCGAATTCAC-TTGCTCACTCTCTCAACTCTGAAAGA 118
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 61 TACCACAAATATCTCCGTTGCCGGCGAAATCACTTTGCTCACTCTCTCAACTTTGAAAGG 120
Query 119 AGACCCAAGTTTCTCTCTTTCTCTCTTCCATGGCTTTCTCATACTCCTTAACTTCACCAT 178
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 121 AGACTCAAGTTTCTCACTTTCTCTCTTCCATGGCTTTCTCATACTCTTTAACTTCTCCGT 180
Query 179 CACCAAATTCGACTCTCTCCTATTCCAATACCCATCAATTTCTCAACCCGTCTTCTTCGT 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CACCAAATTCGACTCTCTCCTATTCCAGTACCCATCAATTTCTCAACCCGTCTTCTTCGT 240
Query 239 TTCCCGTCTCGTTATCAGTCTCATCTCCGAAGAATACCCGCCATCTTCGTCTCCTCATCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCCGTCTCGTTATCAGTCTCATCTCCGAAGAATACCCGCCATCTTCGTCTCCTCATCA 300
Query 299 CCTCTGCTTTGAATCCACAGACGGGACAGCCGACGAAGAAGGCCTCTACTGGTAGTGATA 358
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 301 CCTCCGCTTTGAATCCACAGACGGGACAGCCGACGAAGAAGGCCTCCACCGGTAGTGATA 360
Query 359 ATAGTAGTACGAACAAGAAACGTAAGAAAAAGGGGAAAACTGCGAAACCTGTGGAGAATT 418
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 361 AGAGTAGTACGAACAAGAAACGTAAGAAAAAGGGGAAAATTGCGAAACCTGTGGAGGATT 420
Query 419 GGGAATTGAGAGATGCAGAAGACGCTTTTGAGGAAGATGATGATGCCGATTATTCTTCTT 478
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGAATTGAGAGATTCAGAAGACGCTTTTGAGGAAGATGATGATGCCGATTATTCTTCTT 480
Query 479 CTTCGAGGTCTCTTGCAACATTTAACTCTCCTCCTACCATACCCAAACCACCTGCTGGCT 538
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CTTCGAGTTCTCTAGCAACTTTTAACTCTCCTCCTACCATACCCAAACCACCTGCTGGGT 540
Query 539 TTGTGATTGATGAAACTGGTAGGGTTCTTATGGCCTCTAAGAAGCGTATCGCCACTGTGA 598
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TTGTGATTAATGAAACTGGTAGGGTTCTTATGGCCTCTAAGAAGCGTATCACCACTGTGA 600
Query 599 TTGATCCAACAAACAATAGCCCTTTGGATTGTGTGATAAGAAGAGTATTTACAAGTAGTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGATCCAACAAACAATAGCCCTTTGGATTGTGTGATAAGAAGAGTATTTACAAGTAGTA 660
Query 659 AAGGAGAGGATTGTATGCTTCTTTGCCCTGTGGATACGCCAGTTCAGATTTTGAAGAGCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGAGAGGATTGTATGCTTCTTTGCCCTGTGGATACGCCAGTTCAGATTTTGAAGAGCA 720
Query 719 CAAATATTGATGGATGGTCAGCTGTCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCTG 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 CAAATATTGATGGATGGTCAGCTGTCAGTGATGAAGAGGTCGAATCTCTTCTTCCTGCTG 780
Query 779 CTGCTTATGCTCTTGCAAAGATCCATATGCATCTAGTACACAGCGGGTTCTGTTACACTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTGCTTATGCTCTTGCAAAGATCCATATGCATCTAGTACACAGCGGGTTCTGTTACACTG 840
Query 839 CAAGGGGAGGCTTTTGCTACACTGAAGATAATGTCTTTGATTTTCGCACAGATGATGGCC 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGGGGAGGCTTTTGCTACACGGAAGATAATGTCTTTGATTTTCGCACAGATGATGGCC 900
Query 899 AGGATGTTGAAGGCTTGCCAACTGAAGGGGTTGAGATTACGTGTTTCCATCTGGATGGAT 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGATGTTGAAGGCTTGCCAACTGAAGGGGTTGAGATTACGTGTTTCCATCTGGATGGAT 960
Query 959 CACACTATATGGTCTACACACCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCAGA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 CACACTATATGGTCTACACACCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCAAA 1020
Query 1019 ATGGGCTGCTGCAAATCGCTGATGATGAGCTGTTAGACGATCCAGCTGTGATCAGCGCCA 1078
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1021 ATGGGCTGCTGCAAATCGCTGATGATGAACTCTTAGACGATCCAGCTGTGATCAGCGCCA 1080
Query 1079 TAGATGAGGAAACCGAATTCAATGCCTTGGTGGAGGAAGAGGCGGCTCTACTGGAGTCAC 1138
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1081 TAGACGAGGAAACCGAATTCAATGCCTTGGTGGAGGAAGAGGCGGCTCTCCTGGAATCAC 1140
Query 1139 TGCTTGGGGAAAGAATTTAATGTCTTCATAGGGACTACTTAGCTTTCTTTCTGTATTCCA 1198
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1141 TGCTTGGGGAAAGAATTTGATGTTTTCATAGGGACTACTTAGCTTTCTTTTTGTATTCCA 1200
Query 1199 TAATTGCAATGCCTTGTAATTTAAAATTTCTCTTATAAAAACTCATTTTGCCTTTCCAAA 1258
||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 1201 TAATTGCAATGCCATGTAATCTAAATTTTCTCTTAGAAAAACTCATTTTGCCTTTCCAAA 1260
Query 1259 TCTCT-T-GTGGACAATTA----CG---------GAAATAGAAGTCCCTCCAAATGACCA 1303
||||| | || ||||||| || |||| |||||||||||||||||||||
Sbjct 1261 TCTCTCTTGTTGACAATTGGGTTCGATCATTACCGAAACAGAAGTCCCTCCAAATGACCA 1320
Query 1304 TGCACCTTTAGTACTTATAAACCGAAGGATCCTT 1337
||||||| | ||| ||||||||||||| |||
Sbjct 1321 TGCACCT--A---CTTGTAAACCGAAGGATTCTT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5