BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491342

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33467.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   686    0.0  


> AT4G33467.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:16101464-16102196 REVERSE 
LENGTH=648
Length=648

 Score =  686 bits (371),  Expect = 0.0
 Identities = 457/495 (92%), Gaps = 20/495 (4%)
 Strand=Plus/Plus

Query  1    TTTCTTCTTATATATAGAATCAATC-ATAGACTGTGAGAGATATTCATCAACACTTTTTG  59
            ||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||
Sbjct  21   TTTCTTCTTATATATAGAATCAATCAAAAGACTTTGAGAGATATTCATCAAAACTTTTTG  80

Query  60   TTTTG-TTTCCAAGCTATAAAGTCTGAGAGATATGGAAGTAAGCAAGAGAATGGACATGT  118
            ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  81   TTTTGTTTTTCAAGCTATAAAATCTGAGAGATATGGAAGTAAGCAAGAGAATGGACATGT  140

Query  119  TAGAGAGGAGGTCTTCGATAGAGACAGAGCCCATGACATTGCATCTCGATCAATTAGAAA  178
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  141  TAGAGAGGAGGTCTTCGATAGAGACAGAGCCAATGACATTGCATCTCGATCAATTAGAAA  200

Query  179  ATGCTCGAGAAGAAGCAATT-TATGTGATGAAAACGAAGACAATGGAGGAAGCTATGGAT  237
            ||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct  201  ATGCTCGAGAAGAAGCA-TTGTATGTGATGAAAACAAAAACAATGGAGGAAGCTATGGAT  259

Query  238  ATTTTCACAAAGCAGGAGACGCATGAGGGTTTAAGAGCTAGTGAAGAAAGAGGAGG-ACG  296
            ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | |
Sbjct  260  ATTTTTACAAAGCAGGAGACGCATGAGGGGTTACGAGCTAGTGAAGAAAGAGGAGGGA-G  318

Query  297  ATGCATAAATCTGAAGGATGAGGA---TGATGATGAT---GAAGACGAAAGAATGACGTT  350
            ||||||||||||||||||||||||   ||||||||||   |||||||||||||||| |||
Sbjct  319  ATGCATAAATCTGAAGGATGAGGAGGATGATGATGATTATGAAGACGAAAGAATGATGTT  378

Query  351  TATGAGTCCTCATGGTTGGGACATTGC-TACAGCTCCTTTCTAATTTAGTAATTTGTAAA  409
            |||||||||||||| |||||||||| | ||| ||||||||||||||||||||||||||| 
Sbjct  379  TATGAGTCCTCATGCTTGGGACATT-CATACCGCTCCTTTCTAATTTAGTAATTTGTAAC  437

Query  410  CTCTTTTTTGT--CTCTTTGATGTTCAGTTTTCCTATGGTAGTCCTTGGATCTTTTTGTA  467
            ||||||||| |  ||||||||| ||||||||||||||   | ||||||| ||||||||||
Sbjct  438  CTCTTTTTTTTGGCTCTTTGATTTTCAGTTTTCCTAT---ACTCCTTGG-TCTTTTTGTA  493

Query  468  AATATCTGAATACTT  482
            |||||||||||||||
Sbjct  494  AATATCTGAATACTT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5