BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491344
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33460.1 | Symbols: ATNAP13, EMB2751 | ABC transporter famil... 1435 0.0
> AT4G33460.1 | Symbols: ATNAP13, EMB2751 | ABC transporter family
protein | chr4:16098070-16100266 REVERSE LENGTH=1224
Length=1224
Score = 1435 bits (777), Expect = 0.0
Identities = 925/994 (93%), Gaps = 20/994 (2%)
Strand=Plus/Plus
Query 19 TCGATTCGACGAAACATT-TTTTGATGGTTTTGGGAGgaagaagaagaagaagaaggaag 77
||||||||||||| | || |||| ||||||||| || | ||||||||||||||||||||
Sbjct 50 TCGATTCGACGAAGC-TTATTTTTATGGTTTTGCGA-G--GAAGAAGAAGAAGAAGGAAG 105
Query 78 CTGCAACTTCTAGTC-TTATTGTTAA--C-AGCGAATTCTT--GA-AAATGAATGGCCAG 130
|||||| ||| |||| ||| | || | | ||| ||| || |||||||||| ||
Sbjct 106 CTGCAATTTCAAGTCTTTAAAGAGAATTCTTGAAAATCCTTAAGAGAAATGAATGGTCAC 165
Query 131 TGTTTATTTGCAGCATCTCCTCCTCGTCTCATCCCTCTTCGCTGCTCTATATCATCGAGT 190
|||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 166 TGTTTATTTGCAGCATCTCCTCCTCGTCTCTTCCCTCTT--C-GCTCTATATCATCGAGT 222
Query 191 GTTTCTCCATCCGGCAGTTACAGAATCAAATTCTCCGATAATGTCGCCGTTGAGTGTCGG 250
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTTTCTCCATCCGGTAGTTACAGAATCAAATTCTCCGATAATGTCGCCGTTGAGTGTCGG 282
Query 251 AATCTCTGTTTCTCCGTTAGTACAAGACAAGGCATATCTGTTCCTATCCTCCGTGATTGC 310
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 283 AATCTCTGTTTCTCCGTTAGTACAAGACAAGGTATATCTGTTCCTATTCTCCGTGATTGC 342
Query 311 TCCTTTCGAATTCCTTCTGGACAATTGTGGATGATTCTTGGTCCCAATGGCTGTGGTAAA 370
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 343 TCCTTTCGGATTCCTTCTGGACAATTGTGGATGATTCTTGGTCCTAATGGCTGTGGCAAA 402
Query 371 TCTACCCTTTTGAAGATTTTAGCCGGTGTAGTGAATCCATCCAGCGGCACTGTCTTTGTG 430
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 403 TCCACCCTTTTGAAGATTTTAGCTGGTGTAGTGAATCCATCCAGTGGCACTGTCTTTGTG 462
Query 431 GAGAAGCCCAAGAATTTTGTATTTCAGAATCCTGATCATCAGGTAGTGATGCCTACAGTA 490
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAGAAGCCGAAGAATTTTGTATTTCAGAATCCTGATCATCAGGTAGTGATGCCTACAGTG 522
Query 491 GAAGCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAG 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAAGCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAG 582
Query 551 TCTAGGGTGATTAAAGCTTTGGAGGCAGTTGGTATGCGTGATTATATGCAGAGACCGATT 610
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 583 TCTAGGGTGATTAAAGCTTTGGAGGCTGTTGGTATGCGTGATTATATGCAGAGACCGATT 642
Query 611 CAAACTCTCAGTGGTGGTCAGAAACAAAGAATAGCCATTGCTGGTGCTTTAGCTGAAGCT 670
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 643 CAAACTCTCAGTGGTGGTCAGAAACAAAGAATTGCCATTGCTGGTGCTTTAGCTGAAGCG 702
Query 671 TGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAGTCTGACCAGATGGGT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAGTCTGACCAGATGGGT 762
Query 731 GTGATCAAAGCTGTGAAGGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGG 790
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGG 822
Query 791 GTGACACATCGGTTAGAGGAGCTCAAGTATGCTGATGGAGCTGTGTATATGGAGAACGGT 850
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 823 GTGACACATAGGTTAGAGGAGCTCAAGTATGCGGATGGAGCTGTGTATATGGAGAACGGT 882
Query 851 AGAGTAGTCAGGCATGGTAATGCAGCCGCCATCTCAGATTTCATTAAAGCCAAACAATCA 910
||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 883 AGAGTGGTCAGACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAATCG 942
Query 911 TCTTACATTGATCAAATTGGTTCTTAACTTCCTCTGTTACG-AttttttttCTTTCTTAA 969
||||||||||||||||||||||||||||||||| || || | |||||||| |||| |||
Sbjct 943 TCTTACATTGATCAAATTGGTTCTTAACTTCCTTTGCTAAGGATTTTTTT-CTTTATTAC 1001
Query 970 -TCGA-AGCATATATAGAGGCCATGAAAAGCCGA 1001
|| | | ||||||||||| |||||||| |||
Sbjct 1002 CTCTATAT-ATATATAGAGGTAATGAAAAGTCGA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5