BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491349
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33410.1 | Symbols: ATSPPL1, SPPL1 | SIGNAL PEPTIDE PEPTIDAS... 2361 0.0
> AT4G33410.1 | Symbols: ATSPPL1, SPPL1 | SIGNAL PEPTIDE PEPTIDASE-LIKE
1 | chr4:16080876-16083237 FORWARD LENGTH=1474
Length=1474
Score = 2361 bits (1278), Expect = 0.0
Identities = 1402/1463 (96%), Gaps = 4/1463 (0%)
Strand=Plus/Plus
Query 1 GAAAAGTTTGGTCCTTTACTCGGAGAGACTGATATGGGACAGAGGATCCAACGTCGCGAC 60
|||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAACGTTTGGTCCTTTAGTCGGAGAGACTGATATGCGACAGAGGATCCAACGTCGCGAC 60
Query 61 TGAAACCTAGATCCCAATTCTCCGCTTCGACCACTGTCTCTCCTCCGTCGTTAGGGTTTC 120
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 61 TGAAACCTAGATCCCAATTCTCCGTTTCCACCACTGTCTCTCCTCCGTCGTTAGGGTTTC 120
Query 121 TCAGGTTCACATCTGTTGGAAACTTATTGCAACGTCC-AACGG-ATTTCATATATTCGCT 178
||||||||||||||||||||||||||||||||| ||| || || |||||| ||||| |||
Sbjct 121 TCAGGTTCACATCTGTTGGAAACTTATTGCAAC-TCCTAAAGGCATTTCACATATTTGCT 179
Query 179 TATATGCGTACGAGGCTTGGGGGATTTTTATATAATTCGAAGGAACTCTTTTCTTATCAT 238
| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 180 TTTATGCGTACGAGGCTTGGGGGATATTTATATAATCCGAAATAACTCTTTTCTTATCAT 239
Query 239 GGAGACTCTATGGACTCTTTTGTATCTGCTAGAACCTGCTCCAGCTACTCTCATTGTCAC 298
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 GGAGACTCTGTGGACTCTTTTGTATTTGCTAGAACCTGCTCCAGCTACTCTCATTGTCAC 299
Query 299 AGCTGTCACTGTGACATTTGCATCTGCTTTCCGTGCACTTAACTACGGGAAAGAGATGGA 358
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGCTGTCACCGTGACATTTGCATCCGCTTTCCGTGCACTTAACTACGGGAAAGAGATGGA 359
Query 359 GAGAAATCGTGACTTCTCTGAAACATCCATAACACTAGATAGCTCTCAGGCCTTGATGAT 418
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAACCGTGACTTCTCTGAAGCATCCATAACACTAGATAGCTCTCAGGCCTTGATGAT 419
Query 419 CCCAGTTATGAGCTCTTGCAGTTTGCTTCTCATGTTCTATTTGTTCTCATCTGTTTCTCA 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 CCCAGTTATGAGCTCTTGCAGTTTGCTTCTCATGTTCTATTTGTTCTCTTCTGTTTCTCA 479
Query 479 GCTCCTGACCGCGTTTACAGCCATCGCCTCTGTTTCATCTCTCTTCTATTGGTTATCACC 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GCTCCTGACCGCGTTTACAGCCATCGCCTCTGTTTCTTCTCTCTTCTATTGGTTATCACC 539
Query 539 ATATGCTCTATATATGAAGACGCAGCTTGGTCTCTCTGATCCCTTTGTTTCACGCTGCTG 598
|||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 540 ATATGCGGTATATATGAAGACGCAGCTTGGTCTATCTGATCCCTTTCTTTCACGCTGCTG 599
Query 599 CTCCAAATCATTTACAAGAATCCAAGGATTGCTACTTGTGGCTTTTGCCATGACAGTTGT 658
||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 600 CTCCAAATCGTTTACAAGAATCCAAGGATTGCTACTTGTGGCTTGTGCTATGACAGTTGT 659
Query 659 GGCATGGCTCATCTCTGGCCATTGGGTGTTGAACAATTTGCTTGGAATCTCCATTTGTAT 718
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGCATGGCTCATCTCTGGCCATTGGGTGTTGAACAATTTGCTCGGAATCTCCATTTGTAT 719
Query 719 AGCGTTTGTCAGCCATGTTCGTCTGCCCAATATCAAAATATGTGCAATGCTCCTTGTGTG 778
|||||||| |||||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 720 TGCGTTTGTTAGCCATGTTCGTCTTCCTAATATCAAAATCTGTGCAATGCTCCTCGTGTG 779
Query 779 TCTCTTTGTATATGACATATTCTGGGTTTTCTTCTCTGAGAGATTCTTTGGTGCTAACGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTCTTTGTATATGACATATTCTGGGTTTTCTTCTCTGAGAGATTCTTTGGTGCTAACGT 839
Query 839 TATGGTGGCCGTGGCAACCCAGCAAGCCTCAAACCCAGTTCACACAGTAGCTAACAGTTT 898
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 840 TATGGTGGCCGTGGCAACCCAGCAAGCATCAAACCCAGTTCACACAGTGGCTAACAGTTT 899
Query 899 GAATCTTCCTGGACTGCAATTGATCACAAAGAAACTGGAACTGCCAGTAAAAATTGTGTT 958
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 900 GAATCTTCCTGGACTGCAATTGATCACAAAGAAACTGGAACTACCTGTTAAAATTGTGTT 959
Query 959 TCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCT 1019
Query 1019 TGGTCTTGGTGACATGGCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGTTTTGACCA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TGGTCTTGGTGACATGGCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGCTTTGACCA 1079
Query 1079 TCGAAAAACTAGAGATGTGGTGAATATCTTTGATCTAAAATCTTCCAAGGGACACAAATA 1138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 TCGAAAAACTAGAGATGTGGTGAATATTTTTGATCTAAAATCTTCCAAGGGACACAAATA 1139
Query 1139 CATATGGTATGCACTTCCCGGATATGCCATTGGCTTGGTGGCGGCTCTAGCTGCAGGTGT 1198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATTTGGTATGCACTTCCCGGATATGCCATTGGCTTGGTGGCGGCTCTAGCTGCAGGTGT 1199
Query 1199 CTTGACTCATTCACCTCAGCCAGCTCTACTTTATCTGGTACCATCTACGTTAGGACCGGT 1258
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTGGTACCATCTACGTTAGGACCGGT 1259
Query 1259 GATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATC 1319
Query 1319 CAATCCCATTGAGAAATCTCATGAAATAGAGATCTGAGTTTATAATATCAATCAAGATTA 1378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1320 TAATCCCATTGAGAAATCTCATGAAATAGAGATCTGAGTTTATTATATCAATCAAGATGA 1379
Query 1379 TTCAGAAGCCTAAAACATAATACATAAAACAAAGACGTTTAGTAGGAGCGATATCAAATC 1438
||||||| |||||||||| ||||||||||||||||| ||||||||| | |||| |||
Sbjct 1380 TTCAGAAATCTAAAACATATTACATAAAACAAAGACGCTTAGTAGGAAA-ACATCAGATC 1438
Query 1439 AAGAGTTCTTGTATTCTTAAGTT 1461
|||| ||||||||||||||||||
Sbjct 1439 AAGAATTCTTGTATTCTTAAGTT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5