BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491351
Length=2495
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33390.1 | Symbols: | Plant protein of unknown function (DU... 3205 0.0
> AT4G33390.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr4:16075091-16077706 FORWARD LENGTH=2531
Length=2531
Score = 3205 bits (1735), Expect = 0.0
Identities = 2058/2209 (93%), Gaps = 42/2209 (2%)
Strand=Plus/Plus
Query 293 AGAAAATGGGAAAATTTATATGGATGACACTTTTTTACCTTCCACTTTATCAAACTCTCA 352
||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 359 AGAAAATGGGAAAATTTATATGGATGACACTTTTTTACCTT---C---A--AAA-TCTCA 409
Query 353 AGTAGAAGAAACACAAGATTCTTCTACTACTCCTACTTTTGTTTCTCCCTCTGCTGAGAT 412
|||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 410 AGTAAAAGAAACACAAGATTCTCCTACTACTCCTAGTTTTGTGTCTCCCTCTGCTGAGAT 469
Query 413 TGTTCTGCCTCGCGTAAACACCAAGTATGAAGCAGAGGGTACAACAAGAAATGCAGTGTC 472
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 470 TGTTCTGCCTCGCGTAAACACCAAGTATGAAGCAGAGGGCACAACAAGAAATGCAGTGTC 529
Query 473 TCCAAGATCTCTGTCTTCCCAAAGAAGCATTGGATCTCCAAGAGCA-TTCGTGTCTCCAA 531
||||||| |||||| ||||| |||||||||||||||||||||||| | | |||||||||
Sbjct 530 TCCAAGACCTCTGTATTCCCCTAGAAGCATTGGATCTCCAAGAGCACTAC-TGTCTCCAA 588
Query 532 GGTTTGCAGGATCATCATCACCATTGAGCAATGGAACACCCAGAAGTATGGATTCTTTCA 591
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 589 GGTTTGCAGGATCATCATCACCATTGAGCAATGGAACACCCATAAGTATGGATTCTTTCA 648
Query 592 GAGACTCTATTGATACAGCATCACCTTTTGAATCTGTCAAAGAAGCTGTCTCCAAATTTG 651
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 GAGACTCAATTGATACAGCATCACCTTTTGAATCTGTCAAAGAAGCTGTTTCCAAATTTG 708
Query 652 GGGGAATTACTGATTGGAAAGCACATAGAATGAAAGTATTAGAGCGACGCAATTTTGTGG 711
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGGGAATAACTGATTGGAAGGCACATAGAATGAAAGTATTAGAGCGACGCAATTTTGTGG 768
Query 712 AACAAGAGCTCGACAAGATCCAGGAGGAGATTCCTGAGTACAAAAAGAAAGCAGAGATGG 771
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 AACAAGAGCTCGACAAGATCCAGGAGGAGATTCCTGAGTACAAAAAGAAATCAGAGATGG 828
Query 772 TCGAGATGTCAAAAATGCTAGCGGTTGAGGAGCTAGAGAGTACAAAGAGACTCATAGAAG 831
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 829 TCGAGATGTCAAAAATGCTAGCGGTTGAGGAGCTAGAGAGTACAAAGAGGCTCATAGAAG 888
Query 832 AGTTGAAGCTTAATCTTGACAAAGCTGAAACAGAAGAAAAACAGGCAAAGCAGGACTCTG 891
| ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 889 AATTGAAGCTTAATCTTGAAAAAGCTGAAACAGAAGAACAACAGGCAAAGCAAGACTCTG 948
Query 892 AGCTGGCCAAGCTGAGAGTTCAAGAGATGGAACAAGGAATTGCTGATGAAGCGAGTGTTG 951
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 949 AGCTTGCCAAGCTGAGAGTTCAAGAGATGGAACAAGGAATTGCTGATGAAGCTAGTGTTG 1008
Query 952 CAGCTAAAGCACAGCTTGAAGTGGCTCAAGCAAGACATACATCTGCAATTTCAGAACTAG 1011
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1009 CATCTAAAGCACAGCTTGAAGTCGCTCAAGCAAGACATACATCTGCAATTTCAGAATTGG 1068
Query 1012 AATCTGTCAAGGAAGAGCTACAAAATCTGCAAAAGGAGTATGATGATTTAGTAAAAGAGA 1071
|||||||||||||||||||||||| ||||||||| |||||||| | || ||||||||||
Sbjct 1069 AATCTGTCAAGGAAGAGCTACAAACTCTGCAAAACGAGTATGACGCCTTGGTAAAAGAGA 1128
Query 1072 AAGAGTTGGCAGTGAAGGAAGCAGAAGAAGCTGTT-TTGGCTTCTAAAGAAGTTGAGAGG 1130
|||| ||||| ||||||||||| |||||||| ||| || ||||| |||||||||||||||
Sbjct 1129 AAGATTTGGCTGTGAAGGAAGCTGAAGAAGCGGTTATT-GCTTCAAAAGAAGTTGAGAGG 1187
Query 1131 AAAGTTGAAGAACTCACTATAGAGTTGATAGCTACAAAGGAGTCACTAGAATGTGCGCAT 1190
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1188 AAAGTTGAAGAACTCACTATAGAGTTGATAGCTACAAAGGAGTCATTGGAATGTGCACAT 1247
Query 1191 TCTTCTCATTTGGAGGCGGAAGAACATAAGATTGGAGCAGCCATGTTGCGTGATCAGGAA 1250
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1248 TCTTCTCATTTGGAGGCGGAAGAACATAGGATTGGAGCTGCCATGTTGCGTGATCAGGAG 1307
Query 1251 ACTCACCGGTGGGAGAAGGAACTAAAGCAAGCAGAAGAAGAACTCCAAAGACTTAAGCAA 1310
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1308 ACTCACCGGTGGGAGAAGGAACTAAAGCAAGCAGAGGAAGAACTACAAAGACTTAAGCAA 1367
Query 1311 CATATAGTTTCTACAAATGAACTACAAGTGAAACTTGAATTTGCTTCAGCATTGCTGCTT 1370
||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1368 CATTTAGTTTCTACAAAGGAATTACAAGTGAAACTTGAATTTGCATCAGCCTTGCTGCTT 1427
Query 1371 GATTTAAAGAAAGAACTGGCTGATCATATGGAATCATCCAAGTTAAAGCAGGAAACGGGT 1430
||||| ||||||||| |||| ||||||| |||||||||||| ||||| |||||||| ||
Sbjct 1428 GATTTGAAGAAAGAATTGGCAGATCATAAAGAATCATCCAAGGTAAAGGAGGAAACGAGT 1487
Query 1431 GAGTC---AGTAACAAACACTGAGATTTCATTACAGGAAAAGACTACAGATATACAAAAA 1487
||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1488 GAGACAGTAGTAACAAACATTGAGATTTCATTACAGGAAAAAACTACAGATATACAAAAA 1547
Query 1488 GCTGTTGCTTCTGCAAAGAAAGAACTCGAAGAAGTGAATGCAAATGTGGAGAAAGCAACT 1547
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1548 GCTGTTGCTTCTGCAAAGAAAGAACTCGAAGAAGTGAACGCGAATGTGGAGAAAGCAACT 1607
Query 1548 TCTGAAGTGAATTCCTTAAAGGTAGCATTCTCTTCCTTGAGATTGGAAATTGAGAAAGAG 1607
||||||||||||| ||||||||| |||| |||||||||||||||||||||||| || |||
Sbjct 1608 TCTGAAGTGAATTGCTTAAAGGTTGCATCCTCTTCCTTGAGATTGGAAATTGATAAGGAG 1667
Query 1608 AAATCAGCACTTGACTCACTAAAACAAAGAGAAGGGATGGCATCGGTAACGGTTGCTTCT 1667
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AAATCAGCACTTGACTCATTAAAACAAAGAGAAGGGATGGCATCGGTAACGGTTGCTTCT 1727
Query 1668 TTAGAAGCTGAGATCGACATAACGAGGTGCGAAATAGCTTTGGTTAAGTCCAAGGAAAAA 1727
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 CTAGAAGCTGAGATCGACATAACGAGGTGCGAAATAGCTTTGGTTAAGTCCAAGGAAAAA 1787
Query 1728 GAAGCCAGAGAGGAAATGGTGGAGCTACCAAAGCAACTGCAACAAGCAAGTCAAGAGGCT 1787
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GAAACTAGAGAGGAAATGGTGGAGCTACCAAAGCAACTGCAACAAGCAAGTCAAGAGGCA 1847
Query 1788 GATGAAGCAAAATCATTCGCTGAACTTGCTCGTGAAGAGCTGCGAAAGTCTCAAGAAGAA 1847
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1848 GATGAAGCGAAATCATTCGCTGAACTTGCTCGTGAAGAGCTGCGGAAGTCTCAAGAAGAA 1907
Query 1848 GCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGATTATTTGCAGCTCAGAAA 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 GCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGATTATTTGCAGCTCAGAAA 1967
Query 1908 GAAATTGAGGCTATTAAAGCTTCAGAGAGGCTTGCATTAGCTGCCATAAAGGCCTTGCAA 1967
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1968 GAAATTGAGGCTATTAAAGCTTCAGAGAGGCTGGCATTAGCTGCCATCAAGGCCTTGCAA 2027
Query 1968 GAGAGCGAATCTAGTTCAAAGGACAACGCTGTTGATTCTCCAAGAACCGTAACACTGACA 2027
||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 2028 GAGAGTGAATCTAGTTCAAAGGAAAACGCTGTTGATTCTCCGAGGACTGTAACACTGACA 2087
Query 2028 ATAGAGGAGTACTATGAGCTTAGCAAACGTGCTCACGAGGCTGAAGAAGCCGCCAATGCA 2087
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2088 ATAGAAGAGTACTATGAGCTTAGCAAGCGTGCTCACGAGGCTGAAGAAGCCGCCAATGCA 2147
Query 2088 AGAGTTGCAGCAGCGGTTTCTGAGATCGAAGAAGCCAAAGAAACAGAAAACAGAACCTTG 2147
|||||||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||
Sbjct 2148 AGAGTTGCAGCAGCGGTTTCTGAGGTTGGAGAAGCCAAAGAAACAGAAAAGAGAAGCTTG 2207
Query 2148 GAGAAGTTTGAGGAAGTTAACAAAGAGATGGTTTCGAGAAAGGAAACACTTGCAGGAGCA 2207
|||||||| || ||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2208 GAGAAGTTGGAAGAAGTAAACAAAGAGATGGTTGAGAGAAAGGCAACACTTGCAGGAGCA 2267
Query 2208 ATGGAGAAGGCTGAGAAGGCTAAAGAAGGGAAGTTGGGTGTAGAGCAAGAACTGAGAAAA 2267
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2268 ATGGAGAAGGCTGAGAAGGCTAAAGAAGGGAAGTTGGGTGTAGAACAAGAGCTGAGAAAA 2327
Query 2268 TGGAGGGAAGAAAGTGaaaaaaaGAGAAAGAATGGTGATAATAATGGAGTGAACATAGAA 2327
|||||||||| ||||||||||||||||||||||||| | || | ||| |
Sbjct 2328 TGGAGGGAAGTAAGTGAAAAAAAGAGAAAGAATGGT-AG--TA--GC------CAT-G-- 2373
Query 2328 AAGAGTCATGGAAAAAGCATTCAGGGGTCCAAGGAGAAAGAAGCTGAGACTAATG-AGTC 2386
|| | ||| ||||||| ||||| |||||||||||||||||||||| || | ||
Sbjct 2374 --GA---A---AAA--GCATTCAAGGGTCGAAGGAGAAAGAAGCTGAGACTAGTGTA-TC 2422
Query 2387 AAACGTAACAGAAACAAATCCAATTCCACAGGCAAATCCTGTAAAGAAAAAGAAGAAACT 2446
|||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2423 TAACGAAACAGAAACAAACCCAATCCCACAGGTAAATCCTGTAAAGAAAAAGAAGAAACT 2482
Query 2447 TTTCCCAAGATTTTTTATGTTCTTGATGAAGAAAAAGTCACATAAGTGA 2495
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 TTTCCCAAGATTTTTTATGTTCTTGATGAAGAAAAAGTCACATAAGTGA 2531
Score = 274 bits (148), Expect = 3e-72
Identities = 279/335 (83%), Gaps = 37/335 (11%)
Strand=Plus/Plus
Query 1 AGACTTTCCAATTGTGTACCTCTCTTTTCATGTCTTCTTAATCGGAAAATCAATAattct 60
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 5 AGACTTTCCAATTGTGTACCTCTCTTTTCTTGTCTTCTTAATCAGAAAATCAATAATTCT 64
Query 61 cttctactttcttcatttttcc-tttctcttgtaagtctct-ttt-cattgattctatct 117
|||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||
Sbjct 65 CTTCTACTTTCTTCATTTTTCCCTTTCTCTTGTAAGTCTCTCTTTTCATTGATTCTTTCT 124
Query 118 tttGGTGGTGA--T-C-TTC----GTTTTAG-AGTT-TCT---------C----TTGCTT 154
||||||| || | | ||| ||||||| | || ||| | ||||||
Sbjct 125 ATTGGTGGCGAGCTTCGTTCAATCGTTTTAGCATTTCTCTTGTAAGTTTCGGCCTTGCTT 184
Query 155 TCCTCCAATGGAGGATTTGAAAACAACAGATGCAGTATCTCCTCCAGAAGATTCTAGTGT 214
|||||| ||||||||||||||||||||||| ||| |||||| ||||| | || ||||
Sbjct 185 TCCTCCGATGGAGGATTTGAAAACAACAGACGCACTATCTCTTCCAGTTG-TT--AGTG- 240
Query 215 TATTAGTAATGGTCGCATAATAGAGCCTGAGTTGCATC-AGCCTCAAGCAATACCAACAA 273
|| | | |||| | |||||||||||||||||||| | | ||||||||||||||||||
Sbjct 241 -AT-A--A-TGGTGGAATAATAGAGCCTGAGTTGCAGCTA-CCTCAAGCAATACCAACAG 294
Query 274 AACTAGAGAATAATGACGAAGAAAATGGGAAAATT 308
|||| ||||||||||| ||||||||||||| ||||
Sbjct 295 AACTTGAGAATAATGAAGAAGAAAATGGGACAATT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123812015324
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5