BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491367
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33180.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1681 0.0
> AT4G33180.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:16000177-16002269 FORWARD LENGTH=1243
Length=1243
Score = 1681 bits (910), Expect = 0.0
Identities = 1047/1113 (94%), Gaps = 9/1113 (1%)
Strand=Plus/Plus
Query 1 TTTTGTCCATTTCTCACCCTTTCTCATACTCTCTCTTTTTCTCTGACACGAAGGCTATC- 59
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
Sbjct 40 TTTTGTCCATTTCTCACCCTTTCTCATACTCTCTTTTTTTCTCGGACAAGAAGGCTA-CA 98
Query 60 GAGAGATATGTCGCTGTCGTCTTACCTCAGCCCGACGCGCCTTCTAGAAGGCTACCTCCG 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 GAAAGATATGTCGCTGTCGTCTTACCTCAGCCCGACGCGCCTTCTAGAAGGCTACCTCCG 158
Query 120 TCGTTGCCTCACGTCGGCAGGACTGACGTCGCAGACGCTTTCTATAGACTCTGAAACAAC 179
||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 159 CCGTTGTCTCAGGGCGGCAGGACTGACGTCGCAGACGCTTTCCATAGACTCTGAAACAAC 218
Query 180 AATCCACTTCTGGGGCCCACCACCTCTAGACCACCGGAGCGACGACGACGACAGACCGGT 239
||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 219 CATCCACTTCTGGGGCCCACCACCTCTAGACCACCGGA--G-CGACGATGACAGACCGGT 275
Query 240 GATGCTTCTCCTCCACGGCTTCGGTCCATCCTCCATGTGGCAGTGGCGGCGACAGATTCA 299
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 276 TATGCTTCTCCTCCACGGCTTCGGTCCGTCGTCCATGTGGCAGTGGCGGCGACAGATGCA 335
Query 300 AGCCTTCTCTCCCTCCGTTTTCAGGCTTTATTCTCCCGATCTTGTCTTCTTCGGTGACTC 359
||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||
Sbjct 336 AGCCTTCTCTCCCTCCGCTTTCAGGGTTTATTCTCCCGATCTTGTCTTCTTCGGCGACTC 395
Query 360 TACCTCTTCCTCCACCAATCGCACCGAAGTCTTCCAGGCGGAATGTATGGCAAAGCTAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TACCTCTTCCTCCACCAATCGCACCGAAGTCTTCCAGGCGGAATGTATGGCAAAGCTAAT 455
Query 420 GGAGAAAATGGGAATAGGGAAGTATAATGTGGTTGGAACTAGCTACGGGGGATTTGTGGC 479
|| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| ||
Sbjct 456 GGCGAAAATAGGAATAGGGAAGTATAATGTGGCTGGAACAAGCTACGGGGGGTTTGTTGC 515
Query 480 ATACCACATGGCCAAAATGTGGCCGGAAAAAGTGGAGAAAGTAGTGATTGCAAGCTCTGG 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 516 GTACCACATGGCCAAAATGTGGCCGGAAAAAGTGGAGAAAGTGGTGATTGCAAGCTCCGG 575
Query 540 TATCAACATGCGAAAGTGTGACAGTGAAAGTTTATTGCAAAGATCCAACTGTGAGTGCAT 599
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 576 CATCAACATGCGAAAGTGTGACGGTGAAAGTTTATTGCAAAGATCCAATTGTGAGTGCAT 635
Query 600 CGAGAAAGTTATGTTACCATCCACTGCAACTGAGCTTCGCACACTTATGGCTTTGGCATC 659
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 636 CGAGAAGGTTATGTTACCATCCACTGCAACTGAGTTTCGCACACTTATGGCTTTGGCATC 695
Query 660 TTCGTGGCGGTTAGTTCGTATGTTTCCTGATGCTCTCTGGAACGACGTTATTAATAATTT 719
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 696 TTCATGGCGGTTAGTTCGTATGTTTCCTGATGCTCTCTGGAACGACGTAATCAATAATTT 755
Query 720 ATATAAGAAGAATAGAAAAGAGAAGATTGAATTGTTGAAGGGGGTGACTTTCGGCCGCAA 779
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 756 GTATAAAAAGAATAGAAAAGAGAAGATAGAATTGTTGAAGGGAGTGACTTTCGGCCGGAG 815
Query 780 CGAGAATTTAAACATCGATCCTCTTTCTCAGGAGGTCCTAATTGTATGGGGAGACAAAGA 839
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CGAAAATTTAAACATCGATTCTCTTTCTCAGGAGGTCCTAATTGTATGGGGAGACAAAGA 875
Query 840 TCAGATATTTCCTGTGAAGATGGCTTACGAATTAAAAGAGATTCTTGGAGAGAAAGCCAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 876 TCAGATATTTCCTGTGAAGATGGCTTACGAATTAAAAGAGATTCTTGGAGACAAAACGAA 935
Query 900 ACTAGAAATCATTGACAACACTTCACACGTTCCTCAGATTGAATGTGCGCAAGAGTTCAA 959
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 936 ACTAGAAATCATTGACAACACTTCACATGTTCCTCAGATTGAATGTGCTCAAGAGTTCAA 995
Query 960 CAATATCGTTTTGAAATTTTTGAAGGGTTCTTAAGAGTGGTAATTTTATAC-ATTGCTAC 1018
|||||| ||||||| |||||||||||||||||||||| |||||||||| | || |||||
Sbjct 996 CAATATTGTTTTGAGATTTTTGAAGGGTTCTTAAGAGCCGTAATTTTATTCCAT-GCTAC 1054
Query 1019 ATGATTCTTCAGCTTGTTT-A-GTGTTAAACTATTGGTTACGTAATTTTGCTACTTTACT 1076
|||||||||||| || ||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1055 ATGATTCTTCAGTTTTTTTTAAGTGTTAAACTATTGGTTACGTAATTTTGCGACTTTACT 1114
Query 1077 TGCCATGCTTTCTCATTTTTCATGTAATAACTT 1109
||||||||||||||||||||||||||| |||||
Sbjct 1115 TGCCATGCTTTCTCATTTTTCATGTAAGAACTT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5