BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491374
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1258 0.0
> AT4G33130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana
protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1);
Has 192 Blast hits to 192 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants
- 189; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr4:15979044-15980752 REVERSE LENGTH=1159
Length=1159
Score = 1258 bits (681), Expect = 0.0
Identities = 878/964 (91%), Gaps = 50/964 (5%)
Strand=Plus/Plus
Query 1 TCCGTGA-AGAACAATGCTCTGTATCAAAGCCGAAGCTCTTCATGAAGATCAAAA-CTTA 58
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 85 TCCGTGACA-AACGATGCTCTGTATCAAAGCCGAAGCTCTTCATGAAGATCAAAACCTT- 142
Query 59 GCCTCCTCTTCTTCTTCTTCTCCCAGCACCGATCGCAGCTTCGGAAATGCCACTTTTCGT 118
| || || |||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 143 G-CT--TCCTCTTCTTCTTCTCCTAGCACCGATCGCACCTTCGGAAATGCCACTTTTCGT 199
Query 119 CTTCCCATCAATTGGGGAAGCTCGATCCGGAGGTATTTGAAGAAGACTGGTACATTCTCG 178
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 200 CTTCCCATCAATTGGGGAAGCTCGATCCGGAGATATCTGAAGAAGACTGGTACATTCTCG 259
Query 179 AGAAGATCTTACTCTTCTGGTGATGGCTCTTTGTTTTTTCCTCATCTCGATCAGGAAAGC 238
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 260 AGAAGATCTTACTCTTCTGGTGATGGCTCTTTGTTTTTTCCTGATCTCGAT---GAAAGC 316
Query 239 AAGATGCTTGATCAAACTAGGGGTAGATTTGATGGAAAGACCAAACTATGGTACAAATGT 298
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 317 AAGATGATTGATCAAACTAGTGGTAGATTTGATGGAAAGACCAAACTATGGTACAAATGT 376
Query 299 GAGCTTGAACAAGATATTAAGAGATTGCAGCAGCAATTACAAGAGGAGATTAACTTACGG 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 377 GAGCTTGAACAAGATATTAAGAGATTGCAGCAGCAGTTACAAGAGGAGATTAACTTACGG 436
Query 359 TTAGCTCTAACTAGCGCAGTTGAGCATTCTAGTTCCCCGTTCATGGATTCGCCTTGTCAA 418
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 437 TTAGCTCTAACTAGCGCAGTTGAGCATTCTAGTTCACCGTTTATGGATTCGCCTTGTGAA 496
Query 419 CTTCCTGAT-----A-AGGAGCTTTTGGATAGCTTAGCAATACTGGAAATCACGGTGTCA 472
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 CTTCCTGATAAGGCACAGGAGCTTTTGGATAGCTTAGCAATATTGGAAATCACGGTGTCA 556
Query 473 AAGCTTGAGCAAGAATCAGTTTCCTTGAGATATCTACTTAGGCAAGAGAAAAACGAGCGG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AAGCTTGAGCAAGAATCAGTTTCCTTGAGATATCTACTTAGGCAAGAGAAAAACGAGCGG 616
Query 533 CGCCTCTCTGAGATTCTACAAAAGAAGGCTCATTATTCTGCTCCCTCAAAGTTCACTAAT 592
|| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 617 CGTCTCTCTGAGATTCTACAAAAGAAGTCTCATTATTCTGCTCCTTCAAAGTTCACTAAT 676
Query 593 GCTCAAAATTTCCCTAACAAGTTGGTGACAAGGAAAAGAGAGAGTAAACAAGTGGATTCT 652
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 677 GCTCAAAATTTCCCTAACAAGTCGGTGACGAGGAAAAGAGAGAGTAAACAAGTGGATTCT 736
Query 653 GTGGAGAGTGAAGCTTTACAAGTAGAATGAAGAAGCAAAGAGTGATTATGTGATCTTAGG 712
|||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 737 TTGGATAGTGAAGCTTTGCAAGTAGAATGAAGAAGCAAAGAGTTATTATGTGATCTTAGG 796
Query 713 CATAGCCATATTGGCTG-A----TCAACTCCATGAGCAAACTCTTTCTCCTCTGAGTCTA 767
|||||||||||||||| | ||||| ||||| |||||||||||||||||| | |
Sbjct 797 GATAGCCATATTGGCTGGAGAGATCAAC-CCATGGGCAAACTCTTTCTCCTCT-A----A 850
Query 768 AGAGTTTTAGAACCGCCTTTCAGACTCACCTAGCTGGTCCATGAGCATCTCTTCATTATA 827
|||||||| | ||||||||||||||| ||||||||| ||||||||| |||| |||
Sbjct 851 ----TTTTAGAATCACCTTTCAGACTCACCGAGCTGGTCCCTGAGCATCTATTCA--ATA 904
Query 828 AAGA-CTCTGAGATCTTAGAAAGATACACAGCGCTTTTATGGGGTAAGGTTGATAGGATG 886
| || |||||||||||||||||||||||| | | |||||||||||||||||| |
Sbjct 905 A-GAACTCTGAGATCTTAGAAAGATACAC-----TA--A-GGGGTAAGGTTGATAGGACG 955
Query 887 GTTTATGCCCTGCAGGAGCAGC---AGTGAGGAGCTT----GTATTCTGCATTTAAACAT 939
| |||||||||||||||| ||| |||||||||||| ||||||||||| ||| |||
Sbjct 956 GGTTATGCCCTGCAGGAGGAGCTGCAGTGAGGAGCTTAATTGTATTCTGCATCTAAGCAT 1015
Query 940 AGAA 943
||||
Sbjct 1016 AGAA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5