BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491382
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33060.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 2584 0.0
> AT4G33060.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr4:15948490-15952223 FORWARD
LENGTH=1829
Length=1829
Score = 2584 bits (1399), Expect = 0.0
Identities = 1571/1653 (95%), Gaps = 16/1653 (1%)
Strand=Plus/Plus
Query 1 GAGATGTCGACGGTGTACGTGCTAGAGCCGCCGACAAAGGGAAAGGTCATTGTAAATACA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 GAGATGTCGACGGTGTACGTGCTAGAGCCGCCGACAAAGGGAAAGGTCATTGTAAATACT 102
Query 61 ACTCATGGTCCAATCGACGTCGAGCTATGGCCTAAGGAAGCGCCTAAATCCGTACGGAAC 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 103 ACTCATGGTCCAATCGACGTCGAGCTTTGGCCTAAGGAAGCGCCCAAATCCGTACGGAAC 162
Query 121 TTCGTTCAACTATGTCTCGAGGGTTACTTCGACAACACCATCTTCCACCGTGTTATTCCC 180
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 163 TTCGTTCAACTATGCCTCGAGGGTTACTTTGACAACACCATCTTCCATCGTGTCATTCCC 222
Query 181 GGTTTTCTCGTTCAAGGCGGCGATCCCACCGGCTCCGGCACTGGTGGAGAGAGTATATAT 240
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 223 GGTTTTCTCGTTCAAGGCGGCGATCCCACCGGCTCCGGAACCGGTGGAGATAGTATATAT 282
Query 241 GGAGGTGTCTTTGCCGATGAATTCCATTCAAGATTGAGATTTAACCACCGTGGGATTGTA 300
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 283 GGAGGTGTCTTTGCCGATGAGTTCCATTCAAGGCTGAGATTTAGCCACCGTGGGATTGTT 342
Query 301 GCCATGGCTAATGCGAGCTCACCGAATTCTAATGGAAGTCAGTTCTTTTTCACTTTGGAT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 343 GCCATGGCTAATGCGAGCTCACCTAATTCTAATGGAAGTCAGTTCTTTTTCACTTTGGAT 402
Query 361 AAGTCTGATTGGCTTGATAAGAAGCACACTATCTTTGGCAAGGTGACGGGCGATTCAATC 420
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 403 AAGTGTGATTGGCTTGATAAGAAGCACACTATCTTTGGCAAGGTAACGGGCGATTCAATC 462
Query 421 TACAATCTTTTAAGACTAGGAGAGGTTGACACGAGTAAGGATGATCGGCCACTAGATCCT 480
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 463 TACAATCTTTTAAGACTAGGAGAGGTTGACACGAGTAAGGATGATCGACCTCTGGATCCT 522
Query 481 GCCCCGAAAATATTATCTGTTGAGGTTTTGTGGAACCCGTTCGAAGATATTGTTCCTAGA 540
|| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 523 GCTCCGAAAATATTATCTGTCGAGGTTTTGTGGAACCCTTTTGAAGATATTGTTCCTAGA 582
Query 541 GTGTTGA-CAAAGACATCACAAGAATCTGTTGCTGAAATCAAGGAACCTCCGAA-AAAGC 598
||||| | ||||||||||| ||||||||| |||||||||||||||||| || || |||||
Sbjct 583 GTGTT-AGCAAAGACATCAGAAGAATCTGCTGCTGAAATCAAGGAACC-CCCAACAAAGC 640
Query 599 CCGTGAAGAAATTGAATTTACTATCATTCGGAGAAGAAGCTGAGGAAGAGGAGAAGGAAC 658
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 641 CCGTGAAGAAATTGAATTTACTGTCATTCGGAGAAGAAGCTGAAGAAGAGGAAAAGGAAC 700
Query 659 TGGCTGTTGTAAAGCAAAAGATTAAGAGCAGTCATGACGTATTGAATGATCCTCGACTTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TGGCTGTTGTAAAGCAAAAGATTAAGAGCAGTCATGACGTATTGAATGATCCTCGACTTT 760
Query 719 TGAAGGCAGAAGCTACAGATAAAGA-ACGGAATGCATCTGAGTCGAAGGAGGTACTATCT 777
|||||||||||||| |||||||||| | |||| ||||||||||| |||||||||||||||
Sbjct 761 TGAAGGCAGAAGCTTCAGATAAAGAGA-GGAACGCATCTGAGTCCAAGGAGGTACTATCT 819
Query 778 GTGCGAGAAGCTCTGAATACTAAGAAAGAAGCGGCTCAAAAAGATAAAAGCTTTTCTGTA 837
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GTGCGAGAAGCTCTGAATGCTAAGAAAGAAGCGGCTCAAAAAGATAAAAGCTTTTCTGTA 879
Query 838 TCTGATACAGTTGGACATAGtgatgatgacgatgatgatgaagatgaGACTAAATTTGAT 897
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 880 TCTGATACAGTTGGAAATAGTGATGATGACGATGATGGTGAAGATGAGACTAAATTTGAT 939
Query 898 GCAAAGATGAGGAATCAAGTGCTCAGCAGAAGGAAGGAGATGGGAGACACGCCTTCAAAA 957
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 940 GCAAAGATGAGGAATCAAGTGCTCAGCAGAAGGAAGGAGATTGGAGATACGCCTTCAAAG 999
Query 958 CCAACTCAGaaaaaaaaGAGCTCTAGTCTGAAAGGCCGTGAAGAGTCTATGCAAAGGTCT 1017
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1000 CCGACTCAGAAAAAAAAGAGCTCTAGCCTGAAAGGCCGTGAAGAGTCTACGCAAAGGTCT 1059
Query 1018 GATGCTGTAAGTAGTGAAGACGAGAAACCAAGGATGGAAAAGTTATCCTTGAAGAAAAAA 1077
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1060 GATGCTGTAAGTAGTGAAGATGAGAAACCAAGGATGGAAAAGTTGTCCTTGAAGAAAAAA 1119
Query 1078 GGAATAGGCTCAGAAGCCAAAGCCGAACATATGGAGAAAGGAGACACTGATTTACAGCTT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GGAATAGGCTCAGAAGCCAAAGCCGAACATATGGAGAAAGGAGACACTGATTTACAGCTT 1179
Query 1138 TACAACGCTTCTGAACGCGCCCGGCAGTTGCATAAGTTGAAAAAACGCAGACTGCAAGGA 1197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1180 TACAACGCTTCTGAACGCGCCCGGCAGTTGCATAAGTTGAAAAAGCGCAGACTGCAAGGA 1239
Query 1198 AATGAGGATGCTGTGTTAGCAAAACTCGAGAAGTTTAAGCAGTCTATATCTGCAAAACCG 1257
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1240 AATGAGGATTCTGTGTTAGCAAAACTCGAGAAGTTTAAGCAGTCTATCTCTGCAAAACCG 1299
Query 1258 TTTACCTCGAGTAATGAACCAGTAGCGTTTACCTCGAGTAGTGAACCAGTAGACAATAAA 1317
||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 1300 TTTACCTCGAGTAATGAACCAGTAGTGTTGACCTCGAGTAGTGAACCAGTTGACAATAAA 1359
Query 1318 GAAGAAGATCTCTCTGATTGGAAGAAAGTAAAGCTCAAGTTTGCTCCTGAGCGTGGCAAG 1377
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1360 GAAGAAGATCTCTCTGATTGGAAGAATGTAAAGCTCAAGTTTGCTCCTGAGCGTGGCAAG 1419
Query 1378 GATAAAATGTCGCGCAGGGATGATCCAGATGCGTATGTGGTGGTCGACCCTCTTCTTGAA 1437
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1420 GATAAAATGTCACGCAGGGATGATCCAGATGCGTATATGGTGGTTGACCCTCTTCTTGAA 1479
Query 1438 AAGGGAAAAGAGAAGTTCAACAGAATGCAAGCAAAACAAAAACGAAGGGAGCGAGAATGG 1497
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1480 AAGGGAAAAGAGAAGTTCAACAGAATGCAAGCCAAACAAAAACGAAGGGAGCGAGAATGG 1539
Query 1498 TCAGGAAAATCTCTTGCCTGAGTTTGGGAATCTTAACAATTCAAtttttttttACTTTTG 1557
|| |||||||||||||||||||||||| ||||||||| ||| |||||| |||| ||| ||
Sbjct 1540 TCTGGAAAATCTCTTGCCTGAGTTTGGAAATCTTAACCATTTAATTTTGTTTT-CTTATG 1598
Query 1558 TTGTTTTGTTGATCCTTAAGATACCCGTTGACTGTCAAAATCTCTCCTGTTTTAAACTTA 1617
||| ||||||||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 1599 TTG--------ATCCTTAAGATGCCCGTTCACTGTCAAAATCTCTCCTGTTT-AAACTTA 1649
Query 1618 GATACATACAGAGACATGAGTGAGCATCTTAAA 1650
||||||| ||||||||||| |||||||||||||
Sbjct 1650 GATACATTCAGAGACATGAATGAGCATCTTAAA 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5