BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491387
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr... 1040 0.0
> AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr4:15940561-15941330
REVERSE LENGTH=770
Length=770
Score = 1040 bits (563), Expect = 0.0
Identities = 698/758 (92%), Gaps = 30/758 (4%)
Strand=Plus/Plus
Query 1 GATTCCTTCTTTTGTTTTAAACTTCTTTTTGATTCTTTCTATATATACAAATACAAAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTCCTTCTTTTGTTTTAAACTTCTTTTTGATTCTTTCTATATATACAAATACAAAATC 60
Query 61 TCCTCTTCTTCTTGAAAAAGCTCCTTACGGTTCTCTCTCTCT----AATTGCCTGCTATG 116
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 61 TCCTCTTCTTCTTGAAAAAGCTCTTTACGTTTCTCTCTCTCTCTCTAATTGCCTGCTATG 120
Query 117 ATGCAAGAATTAGGCTTAGAACGTTTCTCAAACGACGTCGTTCGCTTAGACCTCACTCCT 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGCAAGAATTAGGCTTACAACGTTTCTCAAACGACGTCGTTCGCTTAGACCTCACTCCT 180
Query 177 CCT-C--AAACCTCTTCTACTTCTCTCTCCATCGACGAAGAGGAATCAACGGAAGCCAAG 233
||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCTTCTCAAACCTCATCTACTTCTCTTTCCATCGACGAAGAGGAATCAACGGAAGCCAAG 240
Query 234 ATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTCAGTAGATCGTCATGTTGCATG 293
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 ATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTCAGTAGATCTTCATGTTGCATG 300
Query 294 TGCCACGTCATGAAAAGACTCTTAGCAACGATCGGCGTAATCCCCACCGTCATCGAGCTC 353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCCACGTCATGAAGAGACTCTTAGCAACGATCGGCGTAATCCCCACCGTCATCGAGCTC 360
Query 354 GATGATCACGAGGTTTCCTCTCTCCCCACGGCTCTAGAAGAAGAATATTCCGGCGAAGTC 413
||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | |||
Sbjct 361 GATGATCACGAGGTTTCCTCTCTTCCCACGGCTCTACAAGATGAATATTCCGGTGGCGTC 420
Query 414 TCCGCCGTTGTTCCTCCGCCGGCGGTTTTCATTGGCCGTGAGTGCGTCGGAGGTCTTGAG 473
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCGTCGTTGGTCCTCCGCCGGCGGTTTTCATTGGCCGTGAGTGCGTCGGAGGTCTTGAG 480
Query 474 TCCCTCGTCGCTCTTCACTTAAGTGGTCAACTTGTTCCTAAGCTTGTTCAAGTTGGAGCT 533
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCCCTTGTCGCTCTTCACTTAAGTGGTCAACTTGTTCCTAAGCTTGTCCAAGTTGGAGCT 540
Query 534 CTTTGGGTATGATTGTAATTTTCCTCATCTTATTACTTGTCTTAACA--AA-AG------ 584
||||||||||||||||||||||| || |||| |||||||| |||| | || ||
Sbjct 541 CTTTGGGTATGATTGTAATTTTCATCGTCTTCTTACTTGTGTTAAAATCAATAGGCTTTT 600
Query 585 --A--A--AAAAGAAA-------TTAGGGTTTCTCTTCAATTGCTCATGAAAGCCTGATT 631
| | |||||||| |||||||||| ||||||||| ||||||||||| |||
Sbjct 601 GCAGTATCAAAAGAAAACAAAAATTAGGGTTTCACTTCAATTGGTCATGAAAGCCAAATT 660
Query 632 CTGATTATCATCAGATGATCAAAATTAAATACCCATGTAGAAAATGAATTATGAATAATT 691
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CTGATTATCATCAGATGATCATAATTAAACACCCATGTAGAAAATGAATTATGAATAATT 720
Query 692 AAAGATGTGTAAGTAGTATAATTTTATATAATTTGCTT 729
|||||||||||| ||||| |||||||||| ||||||||
Sbjct 721 AAAGATGTGTAATTAGTA-AATTTTATATGATTTGCTT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5