BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491388
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33030.1 | Symbols: SQD1 | sulfoquinovosyldiacylglycerol 1 |... 2383 0.0
> AT4G33030.1 | Symbols: SQD1 | sulfoquinovosyldiacylglycerol 1
| chr4:15935416-15937807 FORWARD LENGTH=1840
Length=1840
Score = 2383 bits (1290), Expect = 0.0
Identities = 1518/1622 (94%), Gaps = 39/1622 (2%)
Strand=Plus/Plus
Query 1 AGGTGAGTGTGTTTGATAGAATAAAGAACAAACCTTGAAAATGGCGCATCTACTTTCAGC 60
|||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 126 AGGTGAATTTGTTTGATAGAATCAAGAACAAACCTTTAAAATGGCGCATCTACTTTCAGC 185
Query 61 TTCATGCCCTTCTGTTATCTCACTT------AGCAGCAGCAAGAATTCAGTTAAACCCTT 114
|||||||||||| |||||||||||| ||||||||||||||||||||||| || ||
Sbjct 186 TTCATGCCCTTCAGTTATCTCACTTAGCAGCAGCAGCAGCAAGAATTCAGTTAAGCCGTT 245
Query 115 TGGTTT-AGGGAAAACCTTCTCCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 173
| |||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 246 T-GTTTCAGGGCAGACCTTCTTCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 304
Query 174 TTCTCTTCCAAGACAAGAAACCGAGAAGAAGTTGCGTTTTCCGAGCAACTGCTACACCTA 233
||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||| |||||
Sbjct 305 TTCTCTTCCAAGAGAAGAAACCGAGAAAAAGCTGCGTTTTCAGAGCAACTGCTGTACCTA 364
Query 234 TAACCCAACAAGCACCACCCGAAACATCTACCGATAACTCATCGTCTAAACCAAAGCGTG 293
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 365 TAACCCAACAAGCACCACCCGAAACATCTACCAATAACTCATCCTCTAAACCAAAGCGTG 424
Query 294 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 484
Query 354 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGGCGTCTTTTCGACCACCAGCTTG 413
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 485 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGACGTCTTTTCGACCACCAGCTTG 544
Query 414 GACTTGAATCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 473
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GACTTGAGTCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 604
Query 474 TGACAGGGAAATCAATTGAGCTGTACGTTGGGGATATCTGTGATTTCGAATTCTTAGCTG 533
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 605 TGACAGGGAAATCAATTGAGTTGTACGTTGGTGATATCTGTGATTTCGAATTCTTAGCTG 664
Query 534 AGTCTTTCAAGTCTTTTGAGCCCGATTCAGTTGTCCACTTCGGGGAACAGAGATCCGCTC 593
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 665 AGTCTTTCAAGTCTTTTGAGCCGGATTCAGTTGTCCACTTTGGGGAACAGAGATCCGCTC 724
Query 594 CTTACTCGATGATTGACCGGTCCAGAGCCGTGTT-TACACAGCACAACAATGTGATTGGG 652
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 725 CTTACTCGATGATTGACCGGTCCAGAGCAGT-TTATACACAGCACAACAATGTGATTGGG 783
Query 653 ACTCTCAATGTTCTCTTTGCTATCAAAGAGTTCGGAGAAGAATGCCATCTTGTAAAACTC 712
|||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 784 ACTCTCAACGTTCTCTTTGCTATAAAAGAGTTTGGAGAGGAGTGTCATCTTGTAAAACTT 843
Query 713 GGGACGATGGGTGAGTACGGAACTCCAAATATCGATATCGAGGAAGGTTATATAACGATA 772
||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||
Sbjct 844 GGGACGATGGGTGAGTATGGAACTCCAAATATTGACATCGAGGAAGGTTATATAACCATA 903
Query 773 ACCCACAATGGTAGAACTGACACTTTGCCATACCCGAAGCAAGCTAGCTCCTTCTATCAT 832
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 904 ACCCACAACGGTAGAACTGACACTTTGCCATACCCCAAGCAAGCTAGCTCCTTTTATCAT 963
Query 833 CTTAGCAAAGTTCACGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 892
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CTTAGCAAAGTTCATGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 1023
Query 893 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 1083
Query 953 GAGGAACTCCGTAACCGACTAGATTACGATGCTGTGTTCGGTACAGCACTTAACCGGTTC 1012
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 GAGGAACTCCGTAACCGACTGGATTACGATGCTGTGTTTGGTACAGCACTTAACCGGTTC 1143
Query 1013 TGTGTGCAAGCCGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACAAGA 1072
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1144 TGTGTGCAAGCTGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACGAGA 1203
Query 1073 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCGAACCCGGCA 1132
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1204 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCAAACCCGGCA 1263
Query 1133 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTCACTGAACAGTTTTCAGTCAATGAACTG 1192
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1264 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTTACAGAACAGTTTTCAGTCAATGAACTG 1323
Query 1193 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTTGACGTGAAAAAGATGACGGTG 1252
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1324 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTAGACGTGAAAAAGATGACGGTG 1383
Query 1253 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACAAAGCTGATG 1312
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1384 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACTAAGCTGATG 1443
Query 1313 GAACTAGGACTTGAGCCTCACTATCTATCTGAGTCACTTCTTGATTCGTTGCTCAACTTT 1372
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1444 GAACTTGGACTTGAGCCTCACTATCTATCTGACTCACTTCTTGATTCGTTGCTCAACTTT 1503
Query 1373 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTACTGTTTCTTGGAAA 1432
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1504 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTAGTGTTTCCTGGAAG 1563
Query 1433 AAGATTGGCGTCAAGACTAAGTCCATGACCGCCTAAAGTGCAGATCAATATTACAC---- 1488
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1564 AAGATTGGCGTCAAGACTAAGTCCATGACCACATAAAGTGCAGACCAATATTACACATAA 1623
Query 1489 G-AT-G-T---G-------T--TGT-TTGT--G--ATCTTCAAACTTCATTTGAGCAAAA 1528
| | | | | | ||| |||| | ||||||||||||||||| ||||||
Sbjct 1624 GGAGAGATTATGAAAGAGATGATGTGTTGTTTGGTATCTTCAAACTTCATTTCTGCAAAA 1683
Query 1529 GACTTGCTAG-CTTAAGAGGTTTTTGTCCATC---CATTGTGCAGGTTTTTTGCTATTAG 1584
|||||||||| ||||||||||||| |||||| ||||||||||||| ||| | ||||
Sbjct 1684 GACTTGCTAGGCTTAAGAGGTTTT-GTCCATATTACATTGTGCAGGTTCTTTAATGTTAG 1742
Query 1585 AT 1586
||
Sbjct 1743 AT 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5