BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491392
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33000.1 | Symbols: CBL10, ATCBL10 | calcineurin B-like prot... 1155 0.0
ATMG01120.1 | Symbols: NAD1B, NAD1 | NADH dehydrogenase 1B | ch... 76.8 3e-13
> AT4G33000.1 | Symbols: CBL10, ATCBL10 | calcineurin B-like protein
10 | chr4:15924349-15926628 FORWARD LENGTH=1001
Length=1001
Score = 1155 bits (625), Expect = 0.0
Identities = 752/813 (92%), Gaps = 10/813 (1%)
Strand=Plus/Plus
Query 1 AGATCAAGCTCTCTCACTGTTGGAGAACAAATCTGCGCTGT-TTTCATACCTTTCTTTGC 59
|||||||||||||||||||| ||||| ||| ||||||| || ||| ||||||||||||||
Sbjct 49 AGATCAAGCTCTCTCACTGTCGGAGAGCAATTCTGCGCCGTCTTT-ATACCTTTCTTTGC 107
Query 60 CATTGTTGATGTCCTCA-TTTCCTCCGTCGGACAATGCTTCGATTGCCGGACCACATCGC 118
|||| | |||||||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 108 CATTATCGATGTCCT-AGTTTCCTCCGTCGGACAATGCTTCGATTGCCGCAGCACATCGC 166
Query 119 CT-GACACATGTCAGCACGCGGATCTCGAACGTCTTGCCCGTGAATCTCGATTTTCAGTC 177
|| | |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 167 CTCG-GACATGTCAGCACGCGGATCTGGAACGTCTTGCTCGTGAATCTCAATTTTCAGTC 225
Query 178 AATGAAGTTGAAGCTTTGTATGAGCTATTCAAGAAATTGAGCTGTTCAATTATTGATGAC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AATGAAGTTGAAGCTTTGTATGAGCTATTCAAGAAATTGAGCTGTTCAATTATTGATGAC 285
Query 238 GGCTTGATTCACAAGGAAGAGCTTCGACTGGCGCTGTTCCAAGCTCCATATGGTGAGAAC 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 286 GGCTTGATTCACAAGGAAGAGCTTAGACTGGCGCTGTTCCAAGCTCCATATGGTGAGAAC 345
Query 298 CTCTTTCTTGATAGGGTTTTTGATCTGTTCGATGAAAAGAAGAATGGGGTTATTGAGTTT 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 346 CTCTTTCTTGATAGGGTTTTTGATTTGTTCGATGAAAAGAAGAATGGGGTTATTGAGTTT 405
Query 358 GAAGAATTCATACATGCTCTCAGTGTCTTTCATCCCTATGCACCAATAGAGGAGAAGATC 417
|| |||||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |
Sbjct 406 GAGGAATTCATCCATGCACTCAGTGTCTTTCATCCCTATGCATCAATCCAGGAGAAGACC 465
Query 418 GACTTTTCC-TTTAGGCTCTACGATCTAAGACAAACCGGATTTATTGAGCGAGAAGAGGT 476
|| |||| | ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 466 GA-TTTTGCATTTAGGCTCTATGATCTAAGACAAACTGGATTCATTGAGCGAGAAGAGGT 524
Query 477 GCAACAAATGGTTTCTGCTATTCTGATGGAATCTGATATGTTGCTGTCTGATGAACTTCT 536
|||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||
Sbjct 525 GCAACAAATGGTTTCTGCTATTCTCTTGGAATCTGATATGATGCTATCCGATGAACTTCT 584
Query 537 GGCCATGATTATTGATAAAACATTTGCTGATGCAGATTCCGACAAAGATGGTAAAATTAA 596
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 585 GACCATGATTATTGATAAAACATTTGCTGATGCAGATTCTGACAAAGACGGTAAAATTAG 644
Query 597 CAAGGAGGAATGGAAGGTGTATGTGCTTAAGCATCCGAGCTTGTTGAAGAATATGACTCT 656
||||| |||||||| || ||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 645 TAAGGATGAATGGAATGTCTATGTGCATAAACATCCTAGCTTGTTGAAGAATATGACTCT 704
Query 657 TCCTTACCTAAAGGATGTGACGACAGCATTCCCAAGTTTTATATTCAACACTGAGGTTGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TCCTTACCTAAAGGATGTGACGACAGCATTCCCAAGTTTTATATTCAACACTGAGGTTGA 764
Query 717 AGATTAAGGCAGCACCGTGTCCATGGAACACCCGTTGTCTTTTTTCTGCTTGGTCCCGTA 776
||| | ||||| || | |||||||| |||||| || ||||||||||||||||||| |||
Sbjct 765 AGACTGAGGCA-CAAC-TGTCCATGCAACACCGGTCATCTTTTTTCTGCTTGGTCCTGTA 822
Query 777 ATTCGAGTGAGATTGTCATGGCGCAAAAGCAGA 809
||||||||||||||||||| |||||| ||||||
Sbjct 823 ATTCGAGTGAGATTGTCATAGCGCAAGAGCAGA 855
> ATMG01120.1 | Symbols: NAD1B, NAD1 | NADH dehydrogenase 1B |
chrM:287917-289083 REVERSE LENGTH=273
Length=273
Score = 76.8 bits (41), Expect = 3e-13
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Plus
Query 768 GGT-CCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATA 811
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 19 GGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATA 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5