BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491398
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1467 0.0
> AT4G32960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32970.1);
Has 106 Blast hits to 106 proteins in 39 species: Archae -
0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:15908618-15910180
REVERSE LENGTH=1001
Length=1001
Score = 1467 bits (794), Expect = 0.0
Identities = 894/942 (95%), Gaps = 7/942 (1%)
Strand=Plus/Plus
Query 2 ACATCGACGGCGAATGGAGGAAGACAGAGTGGCCGTGACCGGAGTAGGAGCGACTCGATA 61
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 27 ACATCGGCGGCGAATGGAGGAAGAGAGAGTGGCCGTGACCGGAGTAGGAACGACTCGATA 86
Query 62 CGCGCTTAAACCGGGGCGTATAAAAAGCGAAGACATACTCATCTGCATCGATGTAGACGC 121
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 87 CGCGCTTAAACCGGGGCGTATAAAAAGCGAGGACATACTCATCTGTATCGATGTAGATGC 146
Query 122 GGAATCGATGGTGGAGATGAAGACCACTGGAACAAACGGTAGGCCTTTGATCAGGATGGA 181
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 147 AGAATCGATGGTGGAGATGAAGACCACTGGAACTAATGGTAGGCCTTTGATCAGGATGGA 206
Query 182 GTGCGTCAAGCAAGCCATTATTCTCTTCATCCACAACAAGCTCTCCATTAATCCCGATCA 241
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 207 GTGCGTCAAGCAAGCCATTATTCTCTTCATTCACAATAAGCTGTCCATTAATCCTGATCA 266
Query 242 TCGCTTTGCTTTCGCTACTCTCGCCAAATCAGCCGCCTGGCTTAAAAAGGAGTTCACCAG 301
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 267 TCGCTTTGCTTTCGCTACGCTCGCCAAATCAGCCGCTTGGCTTAAAAAGGAGTTCACAAG 326
Query 302 CGATGCTGAATCTTCTGTTGCTTCCCTTAGAGGATTGTCACCTAATAAATCCTCTAGTCG 361
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 327 TGATGCTGAATCTGCTGTTGCTTCCCTTAGAGGATTGTCAGGTAATAAATCCTCTAGTCG 386
Query 362 AGCGGATCTCACACTTCTCTTCCGGGCTGCAGCTCAGGAAGCCAAAGTTTCTAGAGCACA 421
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 387 AGCGGATCTCACACTTCTCTTCCGAGCAGCAGCTCAGGAAGCCAAAGTTTCCAGAGCACA 446
Query 422 TAACCGAATTTTCAGGGTGATTCTCATATACTGCAGGTCATCTATGAGACCAACCCATGA 481
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 447 GAACCGAATTTTCAGGGTGATTCTCATATACTGTAGGTCATCTATGAGACCAACCCATGA 506
Query 482 GTGGACCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GTGGCCCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 566
Query 542 TCCTGATAATTGTCCTCAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 601
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TCCTGATAATTGTCCACAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 626
Query 602 AGAGTATGAAGGTTACATATTTGAGAGTGGCCAAGGGCTTGCACGGTCTGTTTTCAAGCC 661
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 627 AGAGTATGAAGGTTACATATTTGAGAGCGGTCAAGGGCTTGCACGGTCTGTTTTCAAGCC 686
Query 662 CATGTCAATGTTGTTATCTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 721
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 AATGTCAATGCTGTTAACTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 746
Query 722 CAGGTCTCTTGCAAAGAAGGTGCCTGTGACTGAGGCGGCAAATGCTCTAGATCATCACAA 781
|| ||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||
Sbjct 747 CATGTCTCTTGCAAAGAAAGTGCCTGTGACTGAGGCGGCAAGTGCTGTAGATCCTCACAA 806
Query 782 TGGGAACAACAATCAGATCATAAACTAATGAAAACACtttttttttttttttATGTATCT 841
||||||||| | ||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 807 TGGGAACAATATTCAGATCATAAACTAATGAAA-CACTTTTTTTTTTTTCTT--GTATCT 863
Query 842 TTTGGTCATGACATGGTTGTAAGTTTCGCATGTGaaaaaaaTACTCAAAAC-T--AGTGA 898
|||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 864 TTTGGTCATGACATGGTTGTGAGTTTCGCATGTGAAAAAAATACTCAAAACCTGTAGTGA 923
Query 899 CAACTTGTTCTAGATCCAT-AAGTAAGAAACTCAAATGTCCA 939
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 924 CAACTTGTTCTAGATCCATCAAGTAAGAAACTCAAATGTCCA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5