BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491404
Length=2260
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32910.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear p... 3489 0.0
> AT4G32910.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear
pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:15881256-15885416 FORWARD LENGTH=2465
Length=2465
Score = 3489 bits (1889), Expect = 0.0
Identities = 2126/2242 (95%), Gaps = 9/2242 (0%)
Strand=Plus/Plus
Query 1 TTCAGGTCTTCTCCCTCCGGAAAAGCTGA-AACCCCAATCTAAAACCCTAACGCCCATTT 59
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 30 TTCAGTTCTTCTCCCTCCGGAAAAGCT-ACAACCCCAATCTAAAACCCTAACGGCCATTT 88
Query 60 CTACAATCGGAGCTCCG-AAATGCCGGGTATAACTTCGGAATCCGGCGGTGGAGAATTGG 118
|||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 89 CTACCATCGGAGCTCCGAAAATGCCGGGTATGTCTTCGGAATCTGGCGGTGGAGAATTGG 148
Query 119 TTTTGTCTTCGGCGAAGGAAAAAGTTCCGGTGTTGTATCCTCTAAGCTACGGCTTGAAGT 178
|| ||| |||| | ||||||||| |||||||||||||||||||||||| ||| | ||||
Sbjct 149 TTCTGTTTTCGACCAAGGAAAAAACTCCGGTGTTGTATCCTCTAAGCTATGGCCTCAAGT 208
Query 179 CTCCGGTTCATAGGCTCTCCATCTCCTGGGGTTGCGGAAACAACCTACGCGTCACGGTTT 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTCCGGTTCACAGGCTCTCCATCTCCTGGGGTTGCGGAAACAACCTACGCGTCACGGTTT 268
Query 239 TACGAAACCCGGAGTTACGCGATGATAATGATGGAGAAGCTGGTGGTAAAGTCGTAAACG 298
|| | || || ||||||||||||||| | || ||||||| ||||||||| ||||||||||
Sbjct 269 TAAGGAATCCAGAGTTACGCGATGATGACGACGGAGAAGTTGGTGGTAAGGTCGTAAACG 328
Query 299 TTAGGCTTAGCGGCGAGGATGGCGAAATCAGTGACGCACAGTGGCGAAGGATGGCTTATG 358
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 329 TTAGGCTTAGCGGCGAGGATGGCGAAATCAGTGACCCACAGTGGCGAAGGATCGCTTATG 388
Query 359 GATCGGTATCTCCGTTCGCGCTTTTGCAGAGCAGAAGAAACTCAATTTCCAGTTTGTCTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GATCGGTATCTCCGTTCGCGCTTTTGCAGAGCAGAAGAAACTCAATTTCCAGTTTGTCTA 448
Query 419 AGATGGATATGGGTTCCTCTTTGTACCAGACTGCGTGGTGGGAATACGTAATGGAATACA 478
||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 449 AGATGGATATGAGTTCCTCTCTGTATCAGACTGCGTGGTGGGAGTACGTAATGGAATACA 508
Query 479 GCAGAGATATTAAATCTCTCCTTAGTAATACAATATCTTCT-CCCGCTCCTTTGATTGAA 537
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 509 GCAGAGATATTAAATCTCTCCTTAGTAATACAATATCTT-TGCCCGCTCCTTTGATTGAA 567
Query 538 GACCCAAGATCAGTTATAACGAATGCTGAGGAACCAACTTCTTTAAAGGCTGCGTGGGAG 597
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GACCCGAGATCAGTTATAAAGAATGCTGAGGAACCAACTTCTTTAAAGGCTGCGTGGGAG 627
Query 598 TTGATGGAATTGTTTTATGCAGATAAGACATGTCTGTCTTGGTTGCCAGAACGGCTCGTC 657
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTGATGGAATTATTTTATGCAGATAAGACATGTCTGTCTTGGTTGCCAGAACGGCTCGTT 687
Query 658 GATTGGCTATCTGTATACGATATACTCCTCTCAAGCTCACATCCAACAATCTACTCAAAG 717
|||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 688 GATTGGTTATCTGAATACGATATACTCCTTTCTAGCTCACATCCAACAATCTACTCAAAG 747
Query 718 CTTGAGGATTTCCAAAAGGAACTTGTTGGCCTACAGGCCATCGAGGATGATCCTAGATAC 777
|| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 748 CTCCAGGATTTCCAAAAGGAACTTGTTGGCCTGCAGGCCATCGAGGATGATCCAAGATAC 807
Query 778 TGGGGAGTGATGGCATCTGCTTTATCAGTCGGTTGGCTAGAAATAGTGGTGAAGTTGTTA 837
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 808 TGGGAAGTGATGGCTTCTGCTTTATCAGTTGGTTGGCTAGAAATAGTGGTGAAGTTGTTA 867
Query 838 CACTTACATGGTTCTTATCAACTAGACCAGCTGGGACATCGTGAGACAGAAAATGGTCTG 897
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 868 CACCTACATGGTTCTTATCAACTAGACCAGCTGGGACATCGTGAGACAGAAAATGGTTTG 927
Query 898 GTAGAAGCCCTTGCTGTTCTCATTTCAAAAATGCCACGAATGCGTCCAAAACTAGAAGAT 957
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 928 GTAGAAGCGGTTGCTGTTCTCATTTCAAAAATGCCACGAATGCGGCCACAACTAGAAGAT 987
Query 958 GGGAAGTTTGGTGAATGCTATGCAGCAAAGCCTGACTTTATGAAGACACGAGAAAGATGG 1017
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGGAAATTTGGTGAATGCTCTGCAGCAAAGCCTGACTTTATGAAGACACGAGAAAGATGG 1047
Query 1018 CAGTCTCAGATAACTAAACTAGAGTGCAGTGCCTTCTGGGTTCAATGTGCTCACCATCAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CAGTCTCAGATAACTAAACTAGAGTGCAGTGCCTTCTGGGTTCAATGTGCTCACCATCAG 1107
Query 1078 ACCCGCGAGGGCTTGAGAAATATGTTGAAGATCATGATGGGAAATGCTGATTGCCTCACA 1137
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1108 ACCCGTGAGGGCTTGAGAAATATGTTGAAGATCATGATAGGAAATGCTGATTGCCTCAGA 1167
Query 1138 GCTGCGACATGTAATTGGATGGAGCTTTTTGTTTCACATCTTCTTTATCTCAGGCCATTC 1197
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GCTGCGACATGTAACTGGATGGAGCTTTTTGTTTCACATCTTCTTTATCTCAGGCCATTT 1227
Query 1198 ACGAAGGGATTAGATAGCATGCATAGTCTCGCCCAGAAATGTGTTCAGTCAAAGCCATGT 1257
||||||||||||||| |||||||||| || |||||||| |||||||||||||||||| ||
Sbjct 1228 ACGAAGGGATTAGATGGCATGCATAGCCTAGCCCAGAAGTGTGTTCAGTCAAAGCCA-GT 1286
Query 1258 -AACACTTTCCATAAGCTCCTAAGACTGCTTATTGGAATTCTTGGAGAAAATACTGAGGT 1316
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TAACACTTCCCATAAGCTTCTAAGACTGCTTATTGGAATTCTTGGAGAAAATACTGAGGT 1346
Query 1317 TGTTCTGGCAGAGTGTTCCAAAGAGTTTGGCTCCTGGATGGTTGCACATGCCATGGAATT 1376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1347 TGTTCTGGCAGAGTGTTCCAAAGAATTTGGCTCCTGGATGGTTGCACATGCCATGGAATT 1406
Query 1377 ATTGACAGCTGGAAGCGATGAAGGAGAAGTTCTTGTACATGAGGAGCAGCGAAAGTTGGG 1436
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1407 ATTGACAGCTGGAAGCGAAGAAGGAGAAGTTCTTGTACATGAGGAACAGCGTAAGTTGGG 1466
Query 1437 TGGAATCAACATGGAAGAGCTCCACAGACTTGTTTATGCTCAAGTTCTTTCTTCTCATGC 1496
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1467 TGGAATTAACATGGAAGAGCTCCATAGACTTGTTTATGCTCAAGTTCTTTCTTCTCATGC 1526
Query 1497 TTTGACTTGGCAGATAGCTCCTATTTATCTAGCATCGTGCGAGAAACAGGGATTAGGCTT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TTTGACTTGGCAGATAGCTCCTATTTATCTAGCATCGTGCGAGAAACAGGGATTAGGCTT 1586
Query 1557 ATTAGAGTTGTTGTTCTACAGGCAGCCTGTTCAAGAGAATCAGTTGCTTATTAAGAGCCT 1616
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1587 ATTAGAGCTGTTGTTCTACAGGCAGCCTGTTCAAGAGAATCAGATGCTTATTAAGAGCCT 1646
Query 1617 AGAGATTTGCCGTCTATATGAACTCAGTAATGTCAGTGCTAAACTTATGAAGATTTCTGG 1676
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1647 AGAGATTTGCCGTCTCTATGAACTCAGTAATGTCAGTGCTAAACTAATGAAGATTTCTGG 1706
Query 1677 AGTACATCATTGGAAACATGGGAGGAAAGGCTCTGGGATTTTCTGGCTCCAGCAAGCTCG 1736
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1707 AGTGCATCATTGGAAACATGGGAGGAAAGGCTCAGGGATTTTCTGGCTCCAGCAAGCTCG 1766
Query 1737 GGATGAACATTGTCTCGGCGTGATTGCTCAACAGCTGTTTGACTCTGTGGGAAAGTCATT 1796
||| ||| |||||||| ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1767 GGACGAAAATTGTCTCAGCGTGATTGCTCAACAGCTGTTTGATTCTGTTGGAAAATCATT 1826
Query 1797 GTCTGATGAAAGCCTCAAACAATGGGAAGGCCTAGTCGAGTTACTGGGTTCGGAATCACA 1856
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1827 GTCTGATGAAAGTCTCAAGCAATGGGAAGGCCTAGTCGAGTTGCTGGGTTCGGAATCACA 1886
Query 1857 GATCTCTGGTGGTCTCGATTTTCTTCACAAGTATAGAGATTTCAAGAGATCGCTGAAGCT 1916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1887 GATCTCTGGTGGTCTCGATTTTCTTCACAAGTATAGAGATTTCAAGAGATCGCTGAAGGT 1946
Query 1917 AGTCCATGATGGAAAAACTATAGATGCAGCTTATGAAGCCGTAGAGAGACTTGTATGGCT 1976
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1947 AGTCCATGATGGAAAAACTATAGATGCAGCTCATGAAGCCGTAGAGAGACTTGTATCGCT 2006
Query 1977 AATGAAGAGCGCTTCTACTCCTCAACGCTTTTGGCTTCCTCTTCTGCATGATTCATTGAA 2036
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2007 AATGAAGAGCCCTTCTACTCCTCAACGCTTCTGGCTTCCTCTTCTGCATGATTCATTGAA 2066
Query 2037 GCTGTTAAATTGGCCAGAACGTTCGCTGATGAATGTTGCACAGACCGAAC-TGATGTTGA 2095
|||||| |||||||| |||||||||||| ||||||| |||||||| ||| |||||||||
Sbjct 2067 GCTGTTGAATTGGCCCGAACGTTCGCTGTTGAATGTAACACAGACC-AACCTGATGTTGA 2125
Query 2096 ACAAATTACAAGAGCTATCAATTGCAAGGTTAAGACCAGGCTTCATAGAATCTGATTTGT 2155
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2126 ACAAATTACAAGAGCTATCAATAGCAAGGTTAAGACCAGGCTTCATAGAATCTGAGTTGT 2185
Query 2156 GTGCTCAAGCTGTGGGTTCAGTGAGACTTGCTCTGGCCACCAATCTCGGAAGAGCTTTTC 2215
||||||||||||||||||||||||||||||||| || || ||||||||| | |||||||
Sbjct 2186 CTGCTCAAGCTGTGGGTTCAGTGAGACTTGCTCTAGCAACAAATCTCGGACGTGCTTTTC 2245
Query 2216 TGGAAGAATGTTAGTGCCGGTT 2237
| |||||||||||| || ||||
Sbjct 2246 TCGAAGAATGTTAGCGCGGGTT 2267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112148017530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5