BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491406
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32900.2 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 1195 0.0
> AT4G32900.2 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr4:15878722-15881041 REVERSE LENGTH=866
Length=866
Score = 1195 bits (647), Expect = 0.0
Identities = 732/772 (95%), Gaps = 9/772 (1%)
Strand=Plus/Plus
Query 1 AAGGCTTAGCTTTCTTCCTCTGTCGCCGAGGAGATATCGCCAGAAGCATACCATGTGGCC 60
||||||||||||| ||||||||||||| ||||| ||| |||||||| || |||||||||
Sbjct 12 AAGGCTTAGCTTTGTTCCTCTGTCGCCTTGGAGA-ATCTCCAGAAGCGTATCATGTGGCC 70
Query 61 TTCGTCTCGAAACTCTTCGCAGCCTCAAGCTATGAGACAAGACAAGAAGTCGATATCTGG 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 71 TTCGTCTCGAAACTCTTCGCAGCCTCAAGCTATGAGACAAGAAAAGAAGTCGATATCTGT 130
Query 121 GAGTTTTAGGGCAGAGAATCTCATACCAGGGGTTGTGATAGGATTCATCATAGGTATGAT 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GAGTTTTAGAGCAGAGAATCTCATACCAGGGGTTGTGATAGGATTCATCATAGGTATGAT 190
Query 181 ATTGGATTTATCACAACAAGTGAAATCCCCAGTGAAAAGGAGCAGACTTTTATCGAGCAA 240
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 191 ATTGGATTTATCACAGCAAGTGACCTCCCCAGTGAAAAGGAGCAGACTTTTATCCAGCAA 250
Query 241 GGTCCAGAAGCAGAGTTCTGTACCAGGCAATGGCAAGGACCAAGAGCTTAAAATGGTATT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 251 GGTCCAGAAGCAGAGTTCTGTACCAGGCAATGGCAAGGACCAAGAGCTTAAAATGGTACT 310
Query 301 GGTAGTTAGGCAAGACTTGAAGATGAGGACAGGCAAAATTGCGTCACAGTGTGCCCATGC 360
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 311 GGTAGTTAGGCAAGACTTGAAGATGAGAACGGGCAAAATTGCGTCACAGTGTGCACATGC 370
Query 361 TGCCACCGGCATGTATGCAGAGTTGATGCAGAGTGACCGATATCTTCTGAGGCGATGGGA 420
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 371 TGCCACCGGCATGTATGCAGAGTTGATGCAGAGTGACCGATACCTTCTGCGGCGATGGGA 430
Query 421 AGAAAACGGGCAACCAAAGATAGTTGTCACTTGCAAAAACCAGCAAGAAATGTAAGAATA 480
||||| ||||| ||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 431 GGAAAATGGGCAGCCAAAGATAGTCGTCACTTGCAAAAACCAGCAAGAAA--T--GAATA 486
Query 481 AGATCACAGAGGCGGCTGAGAGCGTTGGCCTCCCGACTTTTGTTGTAGCTGATGCTGGCA 540
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 487 AGATCACAGAGGCTGCTGAGAGCGTTGGCCTCCCGACTTTTGTTGTAGCTGATGCTGGAA 546
Query 541 GAACAGAGGTTGCGGCTGGATCAAGAACAGTTCTTGCAGTTGGGCCTCGACCAAAGGAGT 600
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 547 GAACTGAGGTTGCGGCTGGATCAAGAACAGTTCTTGCAGTTGGACCTGGACCAAAGGAGT 606
Query 601 TGGTTGATTCCATAACTGGTAGGCTGGCTTTACTCTGATTCAGGAGCTTTTTCTTGGCGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGGTTGATTCCATAACTGGTAGGCTGGCTTTACTCTGATTCAGGAGCTTTTTCTTGGCGT 666
Query 661 AGTTCCTCTGGGATTTTGATTTCTCCAGGATTAAGGTTAATTCAGGCAAGGCATGTTGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 667 AGTTCCTCTGGGATTTTGATTTCTCCAGGATTAAGGTTAATTCAGGCAAGGCAA-T-GT- 723
Query 721 TTGTTGTGTAATGATTAAACAAGGTACATGTTAGATTTGTTGTTGGTTAATT 772
| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 724 T-GTTGTGTAATGATTATTCAAGGTACATGTTAGATTTGTTGTTGGTTAATT 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5