BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491407
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32890.1 | Symbols: GATA9 | GATA transcription factor 9 | ch... 1618 0.0
AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12 | ... 217 2e-55
> AT4G32890.1 | Symbols: GATA9 | GATA transcription factor 9 |
chr4:15875470-15876762 FORWARD LENGTH=1202
Length=1202
Score = 1618 bits (876), Expect = 0.0
Identities = 1106/1212 (91%), Gaps = 36/1212 (3%)
Strand=Plus/Plus
Query 1 ACATGAACCATAACTTTCTCTAACATCACTCTCCTTTACACAACCCTAAAAATAGACCTC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ACATGAACCATAACTTTCTCTAACATCACTCTCCTTTACACAACCCCAAAAATAGACCTC 60
Query 61 TTCTCTC-CG-C-TC-Ct-tt-t-t---ttCATTTATTTACAGTTCTAACCTTCTCTG-- 108
||||| || | || || || | | || || |||| || ||| |||||||||||
Sbjct 61 ACCTCTCTCGTCTTCTCTATTCTCTCCGCTCCTTAATTTCCAATTCCAACCTTCTCTGTT 120
Query 109 TT---TT-ATGGAACGGCTAACCT-CGGAGCTTTTCCTCGTCGCCGGTAACACTGACTCT 163
|| || |||||| | | | || ||||||| |||||||||||||||||| | ||||||
Sbjct 121 TTGCCTTGATGGAAAAGAT-AGCTCCGGAGCTCTTCCTCGTCGCCGGTAACCCGGACTCT 179
Query 164 TTCGTCGTCGACGACCTCCTTGACTTTTCTAACGACGACGGTGAAATTGACGACGGCTTT 223
|||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 180 TTCGTCGTCGACGACCTCCTCGACTTCTCTAACGACGACGGCGAAGTTGACGACGGCTTA 239
Query 224 GACACTCTTCCCGATTCTTCCGCCA-TCTCCACCGGCACTCTCACCGACAGTTCCAACTC 282
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 240 AACACTCTTCCCGATTCTT-CAACACTCTCCACCGGCACTCTCACCGACAGTTCCAACTC 298
Query 283 CTCCTCGCTTTTCACCGACGGCACTGGCTTTTCCGACCTCTGTGTTCCGAGA-GACGATA 341
|||||||||||||||||||||||||||||| |||||||| | | |||||| | |||||||
Sbjct 299 CTCCTCGCTTTTCACCGACGGCACTGGCTTCTCCGACCTATATATTCCGA-ATGACGATA 357
Query 342 TAGCTGAATTAGAATGGCTATCAAATTTTGTGGAAGAATCATTCTCAGGAGAAGTCCAAG 401
|||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 358 TAGCAGAATTAGAATGGTTATCAAATTTTGTGGAAGAATCATTCGCAGGAGAAGACCAAG 417
Query 402 ACAAGCTTCACTTATTATCCGGTTTAAAAAACCCTCAAACCACCGGGTCGACCCTGACCC 461
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACAAGCTTCACTTATTTTCCGGTTTAAAAAACCCTCAAACCACCGGGTCGACCCTGACCC 477
Query 462 ACCTGATTAAACCCGAACCCGAACCCGATTTTGATCAATTCATCGACATCGATGAATCCA 521
|| | ||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 478 ACTTAATTAAACCCGAACCCGAACTTGA---TCATCAATTCATCGACATCGATGAATCCA 534
Query 522 ACGTCGCTGTTCCGGCCAAAGCGAGAAGCAAGAGATCACGCTCTGCAGCCTCCACGTGGG 581
||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 535 ACGTCGCCGTTCCTGCCAAGGCCAGAAGCAAGAGATCACGTTCTGCAGCCTCCACGTGGG 594
Query 582 CTTCCCGCCTTTTATCCCTAGCCGACTCCAACGAAACCAATCCCAAGAAGAAACAACGAA 641
||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 595 CTTCCCGTCTTTTATCCTTAGCCGATTCCGACGAAACCAATCCCAAGAAGAAACAACGAA 654
Query 642 GAGTTAAAGAACAAGACTTCGCCGCAGATATGGACGTAGACTGCGGAGAAA-CTGGAGGA 700
|||| ||||||||||||||||||| |||||||||||| || |||||||||| | ||||||
Sbjct 655 GAGTGAAAGAACAAGACTTCGCCGGAGATATGGACGTGGATTGCGGAGAAAGC-GGAGGA 713
Query 701 GGACGACGTTGTCTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGACCGATG 760
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 GGACGACGTTGTTTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGACCTATG 773
Query 761 GGTCCGAAGACGCTGTGCAACGCTTGCGGAGTAAGGTACAAATCAGGGAGGCTCGTGCCG 820
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 GGTCCGAAGACGCTTTGTAACGCTTGCGGAGTGAGGTACAAATCAGGGAGGCTCGTGCCG 833
Query 821 GAGTATAGACCGGCGTCAAGCCCTACGTTCGTGATGGCGAGACACTCGAACTCTCACCGG 880
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 834 GAGTATAGACCGGCGTCGAGTCCGACGTTCGTGATGGCGAGGCACTCGAACTCTCACCGG 893
Query 881 AAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAGAGACGAGCATTTGCTGAGTCAGCTT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAGAGACGAGCATTTGCTGAGTCAGCTT 953
Query 941 AGGTGTGAGAATCTACTGATGGATATCAGATCCAACGGTGAAGATTTAGTAATGCATAAT 1000
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 AGGTGTGAGAATCTACTGATGGATATCAGATCCAACGGTGAAGATTTCTTAATGCATAAT 1013
Query 1001 AATAATAACCACGTTGCTCCTGATTTTAGACACTTAATCTAGCTTCCTATTTCCACGTGG 1060
|||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1014 AATACTAACCACGTGGCTCCTGATTTTAGACACTTAATCTAGTTTTCTATTTCCACGTGG 1073
Query 1061 ATAATTTCGCAATAATTTGTTCTTTTCGTTTAGCtttttttttttttttttt-tttttAA 1119
|||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 1074 ATAATTTCGCAATAATTTGTTCGTTTCGTTTAGCTTTATTTTTTTTTTTTTCCTTTTTAA 1133
Query 1120 CATCTTAATTGTTTTTCATTTTCTGCAGACTACTACTACTAGTACTATTGATATATTTGA 1179
||| || |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1134 CAT-TT----GTTTTTCATTTTCTGCAGACTACT--T-CTAGTACTATTGATATATTTGA 1185
Query 1180 TAACTTTTGTTT 1191
|| |||||||||
Sbjct 1186 TAGCTTTTGTTT 1197
> AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12
| chr5:9004313-9005502 REVERSE LENGTH=1081
Length=1081
Score = 217 bits (117), Expect = 2e-55
Identities = 187/221 (85%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 696 GAGGAGGACGACGTTGTCTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGAC 755
||||| || |||| ||||| |||||||| ||||| ||||| ||||||||| |||| || |
Sbjct 649 GAGGA-GA-GACGGTGTCTCCACTGCGCCACGGATAAGACTCCGCAATGGCGGACAGGCC 706
Query 756 CGATGGGTCCGAAGACGCTGTGCAACGCTTGCGGAGTAAGGTACAAATCAGGGA-GGCTC 814
| ||||| ||||||||| |||||||||||||||| || ||||||||||| |||| | |
Sbjct 707 CAATGGGCCCGAAGACGTTGTGCAACGCTTGCGGTGTTAGGTACAAATC-GGGACGTTTA 765
Query 815 GTGCCGGAGTATAGACCGGCGTCAAGCCCTACGTTCGTGATGGCGAGACACTCGAACTCT 874
|||||||||||| | || ||| | || || ||||| ||| |||||| |||||| || |||
Sbjct 766 GTGCCGGAGTATCGGCCCGCGGCGAGTCCGACGTTTGTGCTGGCGAAACACTCAAATTCT 825
Query 875 CACCGGAAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAG 915
|| |||||||| |||||||||||||||||||||||||||||
Sbjct 826 CATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAGATGAG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5