BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491409

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32870.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   797    0.0  


> AT4G32870.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr4:15862143-15862741 FORWARD 
LENGTH=599
Length=599

 Score =  797 bits (431),  Expect = 0.0
 Identities = 487/515 (95%), Gaps = 0/515 (0%)
 Strand=Plus/Plus

Query  1    GCACCGAAGCAAATTCGTAGGTCAAATGGGAACGGAAACGGCGTCGTTTAAGTGGGAAGG  60
            ||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct  1    GCATCGAAGCAAAATCGTAGGCCAAATGGGAACGGAAACGGTGTCGTTTAAGTGGGAGGG  60

Query  61   CAAGAAAGTCGCTCAAGTCAACGGTGTCACGGCTGAGAAAGTCTGGTCGGTTTTTTCTGA  120
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   TAAGAAAGTCGCTCAAGTCAACGGTGTCACGGCTGAGAAAGTTTGGTCGGTTTTTTCTGA  120

Query  121  CTTTTGCAACGTCCAAGAGTGGTTCCCAGCAGTCGACACGTGTTACCGAGTCCAAGGAAC  180
            ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  121  CTTCTGCAACGTCCAAGAGTGGTTCCCATCAGTCGATACGTGTTACCGAGTCCAAGGAAC  180

Query  181  CGATGGTGAACCGGGTCTGATCCGATACTGCGCCACGACCAAAACCAAGGAAGAGGAAAG  240
            |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct  181  CGATGGTGTACCGGGTCTGATCCGATACTGCTCCACCACCAAAACCAAGGAAGAGGGAAG  240

Query  241  CAGGTGGGCTAAAGAGAGGCTGGTCAAGATGGATCCCATTGGACGGTGTTTGAGCTATGA  300
            ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct  241  CAGGTGGGCTAAAGAGAAGCTGGTCAAGATCGATCCCATTGGACGGTGTTTGAGCTATGA  300

Query  301  GATTCTCGAGAATAACGTTGGGTTCAGATCTTACGTGGCGACAGTCGAAGTAATGCCAGT  360
            ||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||
Sbjct  301  GATCCTCGAGAATAACGTAGGGTTTAGATCTTACGTGGCGACAGTCCAAGTAACGCCAGT  360

Query  361  GGACGGTGACGATCAAGTATCACGAATCGAGTGGTCGTTTGTGGCCGATCCTGTTGATGG  420
            ||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct  361  GGACGGTGAAGATCAAGTGTCTCGAATCGAGTGGTCGTTTGTTGCCGATCCTGTTGATGG  420

Query  421  TTGGAAGAAGGAAGACCTTGAATCCTACGTTGACTTTTGCCTTCAACATATGGCCAAGAA  480
            |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct  421  TTGGAAGAAGGAAGACCTCGAATCATACGTTGACTTTTGCCTTCAACATATGGCCAACAA  480

Query  481  AATGGAACTCAATCTGTAATATCTTTTTCTTTCTT  515
            |||||||||||||||||||||||||||||||||||
Sbjct  481  AATGGAACTCAATCTGTAATATCTTTTTCTTTCTT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27025971086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5