BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491410
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32860.1 | Symbols: | unknown protein; Has 46 Blast hits to... 1131 0.0
> AT4G32860.1 | Symbols: | unknown protein; Has 46 Blast hits
to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:15856611-15857359 REVERSE
LENGTH=749
Length=749
Score = 1131 bits (612), Expect = 0.0
Identities = 689/726 (95%), Gaps = 5/726 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCTcacacacacatacacacaTGCAAATACACGACGACATGGAGGTTTGTTCAAC 60
||||||||| | |||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 26 CTCTCTCTCCCTCACACACGCACATATGCAAATACACGACGACATGGAGGTTTGCTCAAC 85
Query 61 AGTCACGACGAAGAAGCTCTCAAGCCTGGCCAAGCTAGTCCTCTTCACCATCCAGAAGGT 120
|||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 86 AGTCACAACGAAGAAGCTCTCAAGCCTGGCCAAGCTAATTCTCTTCACCATACAGAAGGT 145
Query 121 TTCAGACGCCTCACGTCATAAACTCCTCACAACCCTCGATCCACATCTACTCGCTAAACG 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 146 TTCAGACGCCTCACGTCACAAACTCCTCACAACCCTCGATCCACATCTACTCGCGAAACG 205
Query 181 TGGCAAGATCCTACGCAAATCCCTAAACGACGCCGTCTCAACCTCTCACTCACGCATCAC 240
|||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||
Sbjct 206 TGGCAAGATCCTACGCAAATCCTTAAACGAAGCCGTTTCAACCTCCCACTCACGCATCAC 265
Query 241 GTGCCGTCCTTCCGACCACCAAGATGTCCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 266 GTGCCGTCCTTCCGACCACCAAGATGTGCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 325
Query 301 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACCTTCCTACGCCACCACCGT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 326 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACGTTCCTACGCCACCACCGT 385
Query 361 AAGCAAAGGGCGACGTAGTAACGGGTCTCACAACAAACCGCTCATCAACAAGCGCCAACG 420
||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 386 AAGCAAAGGACGACGTAGTAACGGATCTCATAACAGACCGCTCATCAACAAGCGCCAACG 445
Query 421 CCAAGCGTATATCCGGTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CCAAGCGTATATCCGTTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 505
Query 481 CGT-GTCGGCGGCAGTGTTTCCCGACGTAGCAAGCAGCACCGGTACGATGGAAAGCTGCC 539
||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 506 CGTAG-CGGCGGCAGTATTTCCCGACGTAGCTAGCAGCACCGGTACGATGGAAAGCTGCC 564
Query 540 ATGTGGACAGAGCTGCGGAGGAGTTTATACAGAGGTTCTATAGACAGCTGAGGTTGCAGA 599
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 565 ACGTGGACAGAGCTGCGGAGGAGTTTATACAGAGTTTCTATAGACAGCTGAGGTTGCAGA 624
Query 600 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACaaaaaatcttatggaa 659
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 625 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACGAAAAATCTTATCGAA 684
Query 660 aaaataaaa-aC-AAGTATTTTAGGTAACTTTCGTAGTCTTGTTTTGACTTTCTAATTTC 717
||| ||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 685 AAA-TAAAATATTAAGTATTCTAGGTAACTTTGGTAGTCTTGTTTTGACTTTCTAATTTC 743
Query 718 TCCTTT 723
||||||
Sbjct 744 TCCTTT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5