BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491411
Length=3048
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4... 3823 0.0
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:1102... 1834 0.0
> AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15849772-15854460
FORWARD LENGTH=2677
Length=2677
Score = 3823 bits (2070), Expect = 0.0
Identities = 2277/2372 (96%), Gaps = 33/2372 (1%)
Strand=Plus/Plus
Query 1 ctctctctctctccatctccctcatgcctccttcttcttctcgat-c--catctctctct 57
||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||
Sbjct 19 CTCTCTCTCTCTCCATCTCCCTCATACCTCCTTCTTCTTCTTGATCCATCATCTCTCTCT 78
Query 58 ctttctctcttctctctGTTCCTAGTCCATCGATTTAACCTCTTTCAGATTCTCCTTCTT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CTTTCTCTCTTCTCTCTGTTCCTAGTCCATCGATTTAACCTCTTTCAGATTCTCCTTCTT 138
Query 118 CTTTGACTTTTCTTTGACACCGTAGTCTCTCTCCCCTTCCATCGATTTAGGGTTTCCGAT 177
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 139 CTTTGACTTTT-TTTGACACCGTAGTCTCTTTCCCCTTCCATCGATTTAGGGTTTCCGAT 197
Query 178 TTTCAAAATTTCCTTTCTTTTTTG-TTCCTCTCCTTCTACAA-TCTC--CTCGAATTCAT 233
||||||||| |||||| || |||| ||||||||||| | ||| || | ||||||| |||
Sbjct 198 TTTCAAAATCTCCTTT-TTATTTGTTTCCTCTCCTTGTGCAATTCCCGTCTCGAATCCAT 256
Query 234 CTTGACCAAGGAGGCGTCTGATCCGATCT--C-C----C---TC--G-A--GA-A-TATG 276
||||||| || || |||||||||||||| | | | || | | || | ||||
Sbjct 257 CTTGACC-TGG-GG-GTCTGATCCGATCTCCCTCTAATCATATCGTGAAGCGAGATTATG 313
Query 277 TTTTTGTGCTGCTCTTCTGCTTTGATCGCCTAGGATTTGT-AATCGTGTTATGATGGTGG 335
|||||||||||| |||||||||||||||| ||||| || | |||||||||||||||||||
Sbjct 314 TTTTTGTGCTGCGCTTCTGCTTTGATCGCTTAGGA-TTATCAATCGTGTTATGATGGTGG 372
Query 336 GTACACAAAATTTAGGTGGTTCGTTGCCGCCGCTGAATTCCCCTAAAAGCTATGGAATTA 395
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 373 GTACTCAAAATTTAGGTGGTTCGTTGCCGCCGCTGAATTCTCCTAAAAGCTATGGAATTA 432
Query 396 CGAAGCCGCTCTCGCTTGCTGGCCCCTCCTCGGCGGATATTAAGCGTAATGTCGAGCTGG 455
||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||||
Sbjct 433 CGAAGCCGCTCTCTCTTGCTGGGCCTTCTTCGGCGGATATTAAGCGTAATGTGGAGCTGG 492
Query 456 AGAAGTACTTGGTTGATGAGGGACTCTACGAGAGCAAGGACGATACCATGCGGAGAGAGG 515
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 493 AGAAGTACTTGGTTGATGAGGGACTCTACGAGAGCAAGGATGATACCATGCGGCGAGAGG 552
Query 516 AAGTTCTGGGACGCATTGATCAGATTGTAAAGCACTGGGTGAAACAGTTAACGCAGCAAA 575
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AAGTTCTAGGACGCATCGATCAGATTGTAAAGCACTGGGTGAAACAGTTAACGCAGCAAA 612
Query 576 GAGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGTCATTTTCACCTTTGGATCCT 635
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 613 GAGGATATACTGATCAGATGGTGGAAGATGCAAATGCTGTCATTTTCACCTTTGGATCCT 672
Query 636 ACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATACTTTGTGTGTTGGGCCATCTT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATACTTTGTGTGTTGGGCCATCTT 732
Query 696 ATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGATATATTGGCTGAGATGGAAG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGATATATTGGCTGAGATGGAAG 792
Query 756 AAGTGACTGAGCTCCATCCTGTTCCCGACGCCCATGTTCCGGTCATGAAATTTAAGTTTC 815
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 793 AAGTGACTGAGCTCCATCCTGTTCCCGATGCCCATGTTCCGGTCATGAAATTTAAGTTTC 852
Query 816 AAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACTTTTAGTTGTGCCACAGGATC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACTTTTAGTTGTGCCACAGGATC 912
Query 876 TGGATATCTCCAGCTCTTCTGTGCTGTGTGATGTTGATGAGCCAACCGTTCGAAGTCTTA 935
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 913 TGGATATCTCCAGCTCTTCTGTGCTGTGTGAAGTTGATGAGCCAACCGTTCGAAGTCTTA 972
Query 936 ATGGTTGTAGAGTTGCTGATCAGATTCTGAAACTCGTTCCAAATTTTGAGCACTTCCGGA 995
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 973 ATGGTTGTAGAGTTGCTGATCAGATTCTTAAACTCGTTCCAAATTTTGAGCACTTCCGGA 1032
Query 996 CAACTTTAAGATGCCTGAAGTATTGGGCTAAGAAGCGTGGCGTGTATTCAAATGTGACTG 1055
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1033 CAACCTTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTGTATTCAAATGTGACTG 1092
Query 1056 GATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCGTGTCTGCCAGCTCTATCCAA 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1093 GATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCGTGTCTGCCAGCTTTATCCAA 1152
Query 1116 ATGCAATTCCTAGTATGCTGGTTTCTCGTTTTTTCAGAGTGTATACTCAATGGCGGTGGC 1175
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1153 ATGCAATTCCTAGTATGCTGGTTTCTCGTTTTTTTAGAGTATATACTCAATGGCGGTGGC 1212
Query 1176 CGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGCTTGGATTTCCTGTCTGGGACC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGCTTGGATTTCCTGTCTGGGACC 1272
Query 1236 CTCGTAAAAATCATCGTGACCGCTATCACCTTATGCCAATAATAACTCCAGCTTACCCAT 1295
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GTCGTAAGAATCATCGCGACCGCTATCACCTTATGCCAATAATAACTCCAGCTTACCCAT 1332
Query 1296 GCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGCGTTATGACAGAGCAGTTCC 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGCGTTATGACAGAGCAGTTCC 1392
Query 1356 AGTTTGGTAACAATATCTTGCAGGAGATTGAATTAAATAAACAGCACTGGAGCTCTTTAT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGTTTGGTAACAATATCTTGCAGGAGATTGAATTAAATAAACAGCACTGGAGCTCTTTAT 1452
Query 1416 TTGAACAATATATGTTTTTCGAGGCATATAAAAACTACCTTCAGGTTGATATAGTGGCAG 1475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1453 TTGAACAATATATGTTTTTCGAGGCATACAAAAACTACCTTCAGGTTGATATAGTGGCAG 1512
Query 1476 GAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTGGAGTCGCGGTTCAGACAGCTGA 1535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 CAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTGGAGTCGCGGTTCAGACAGCTGA 1572
Query 1536 CCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATGTGCCATCCCCAACCAAATGAGT 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 CCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATGTGCCATCCCCAACCAAATGAGT 1632
Query 1596 ATGTAGACACGGCTAGGCAGTTTCTGCATTGTGCCTTTTTCATGGGCTTGCAGAGGGCAG 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 ATGTAGACACGGCTAGGCAGTTTCTGCATTGTGCCTTTTTCATGGGCTTGCAGAGGGCAG 1692
Query 1656 AGGGAGTTGGTGGTCAAGAATGTCAACAATTTGATATACGTGGTACGGTCGATGAGTTCA 1715
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1693 AGGGAGTTGGGGGTCAAGAATGTCAACAGTTTGATATACGTGGTACTGTCGATGAGTTCA 1752
Query 1716 GACAAGAAGTAAACATGTATATGTTCTGGAAACCTGGGATGGATGTGTTCGTTTCTCATG 1775
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1753 GACAAGAAGTAAACATGTATATGTTTTGGAAACCTGGGATGGATGTTTTCGTTTCTCATG 1812
Query 1776 TTCGTAGACGACAGCTTCCTCCTTTTGTTTTCCCAAATGGATATCGAAGGCCTCGGCAGT 1835
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1813 TTCGTAGACGACAGCTTCCACCTTTTGTTTTCCCTAATGGATATCGAAGGCCTCGGCAGT 1872
Query 1836 CCAGGCACCAAAATCAACCGGGTGGAAAATCTGGTGAAGATGGCACTGTTTCTCATTCTG 1895
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1873 CCAGGCACCAAAATCTACCGGGTGGAAAATCTGGTGAAGATGGCAGTGTTTCTCATTCCG 1932
Query 1896 GCTCTGTGGTGGAGAGGCATGCCAAGAGAAAGAACGATAGTGAAATGATGGATGCGAGGC 1955
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1933 GCTCTGTGGTGGAGAGGCATGCCAAGCGAAAGAACGATAGTGAAATGATGGATGTGAGGC 1992
Query 1956 CAGAGAAACCTGAGAAGCGTGCATCTCTTAGTCCACAGAGTCTAGATATAGTTTCTCCTG 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 CAGAGAAACCTGAGAAGCGTGCATCTCTTAGTCCACAGAGTCTAGATATAGTTTCTCCTG 2052
Query 2016 AAAGTAGTGCTATCACTACTGGTTGGACTCCTCCTGTTTGCAACCTTAGAAGGCCACCAA 2075
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 AAAATAGTGCTATCACAACTGGTTGGACTCCTCCTGTTTGCAACCTTAGAAGGCCACCAA 2112
Query 2076 GCGAGGAAATAGAAGCTGAAAATTTGAACACCGAGTGTACTGAACTCACAAACTTTGCTC 2135
||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||
Sbjct 2113 GCGAGGAAATAGAAGCTGATAATTTGAACACTGAGTGTACTGAACTCACAGACTTAGCTC 2172
Query 2136 GAAATGAGTGTAACTCTGGCAGCGAGCAAGTTCTTGAAGTAGATAGTATGGCTCTAGTTC 2195
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2173 GAAATGAGTGTAACTCTGGCAGCGAGCAAGTTCTTGAAGTAGATAGTATGGCTGTAGTTC 2232
Query 2196 AAGAATGCTCTGATCCGGCTGAGCCTTTGGGAAAGTGTGTAACACCTGACTCTAGT-GAT 2254
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 2233 AAGAATGCTCTGATCCTGCTGAGCCTTTGGGAAAGTGTGTAACACCTGACTCT-GTTGAT 2291
Query 2255 GTGGTAGCATGTGTAAGTGGGCAGGAAGAAAACTTAGATCGTAATTTGAGGTCTGTATCC 2314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 GTGGTAGCATGTGTAAGTGGGCAGGAAGAAAACTTAGATCGTAATTTGAGGTCTGTATCC 2351
Query 2315 ATCAGTGGTACTGACTCCCAACCTCTTCCGAG 2346
||||||||||||||||||| || |||||||||
Sbjct 2352 ATCAGTGGTACTGACTCCCCACTTCTTCCGAG 2383
Score = 322 bits (174), Expect = 1e-86
Identities = 270/313 (86%), Gaps = 19/313 (6%)
Strand=Plus/Plus
Query 2374 AGCAGATCTTGTGGGCAGAACCGTGATTATGAGGTTAGGTTTTGGGTTTCCTGCTGCAAA 2433
|||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 2382 AGCAGATCCTGTGGGCAGAACCGTGATTATGA-G---GGTTTCGGGTTTCCTGCTGCAAA 2437
Query 2434 TTCAGATCCGT-TGGGAAAGGAAAACTTGTACTCTCAAAGTGGCATGTCGGAAGACCTTC 2492
||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2438 TTCAGATCC-TATGGGAAAGAAAAACTTGTACTCTCAAAGCGGCATGTCGGAAGACCTTC 2496
Query 2493 AGTCAAACTCTTTGGTCAGCGGGATGGAGAAGTCGGAAGACAGAGCTAGCACAAGCAGGT 2552
|||||||||||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 2497 AGTCAAACTCTTTGGTGAGCGGGATGGAGAAGTCGGAAGACAGAGCTAGGTCA-GAATCT 2555
Query 2553 TAAGCTTAAAGTCCACTGTGTGAACGTCCTCTAGGCTATTGACGTGAAGAAAACGAGG-A 2611
| | || ||| || | | || | | | | |||||||||||||||||||| || |
Sbjct 2556 TTC-CAGAA-GTC-ACAGA-T-AAGG-CAT---G-CTATTGACGTGAAGAAAACGGGGGA 2605
Query 2612 TATCAACTCAAATTGTTACGGTGGACAGACGACAGGGTCCAGAAGCTTTTTGGTAAGTGA 2671
| ||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct 2606 TTTCAACTCAAATTGTTGCGTTGGACAGACGACAGAGTCCAGAAGCTTTT-GGTAAGTGA 2664
Query 2672 ACTTTTAATATGG 2684
| |||||||||||
Sbjct 2665 ATTTTTAATATGG 2677
> AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11025884-11030708
REVERSE LENGTH=2910
Length=2910
Score = 1834 bits (993), Expect = 0.0
Identities = 1457/1682 (87%), Gaps = 27/1682 (2%)
Strand=Plus/Plus
Query 379 TAAAAGCTATGGAATTACGAAGCCGCTCTCGCTTGCTGGCCCCTCCT-CGGCGGATATTA 437
||| |||||||| || ||| |||| || || ||||||| ||| || | || ||| |||
Sbjct 328 TAAGAGCTATGGGATCACGGAGCCACTGTCTATTGCTGG-ACCTTCTGCTGCTGATGTTA 386
Query 438 AGCGTAATGTCGAGCTGGAGAAG-TACTTGGTTGATGAGGGACTCTACGAGAGCAAGGAC 496
|||||||| | || || |||||| | | ||||||||||||| |||||||||||||||||
Sbjct 387 AGCGTAATTTGGAACTAGAGAAGTTTC-TGGTTGATGAGGGGCTCTACGAGAGCAAGGAA 445
Query 497 GATACCATGCGGAGAGAGGAAGTTCTGGGACGCATTGATCAGATTGTAAAGCACTGGGTG 556
|| || |||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 446 GAAACTATGCGGAGAGAGGAAGTTGTGGTTCGCATTGATCAGATTGTAAAACACTGGGTG 505
Query 557 AAACAGTTAACGCAG-CAAAGAGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGT 615
||||||||||| | | || || || ||||| |||||||||||||||||||||||||||||
Sbjct 506 AAACAGTTAACTC-GTCAGAGGGGCTATACTGATCAGATGGTGGAGGATGCAAATGCTGT 564
Query 616 CATTTTCACCTTTGGATCCTACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATAC 675
||||||||| |||||||| ||||| ||||| || || || ||| |||||| ||||||||
Sbjct 565 CATTTTCACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTATGGCTGATATTGATAC 624
Query 676 TTTGTGTGTTGGGCCATCTTATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGA 735
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||
Sbjct 625 TTTGTGTGTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTTTCTTCCGTGA 684
Query 736 TATATTGGCTGAGATGGAAGAAGTGACTGAGCTCCATCCTGTTCCCGACGCCCATGTTCC 795
|||||||||||| ||||||||||||||||| || || |||||| | || |||||||| ||
Sbjct 685 TATATTGGCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCC 744
Query 796 GGTCATGAAATTTAAGTTTCAAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACT 855
||||||||||||||||| ||||||||| | |||||||| || |||||||||||||| ||
Sbjct 745 AGTCATGAAATTTAAGTTCCAAGGAATATCAATTGATCTTCTGTATGCTAGCATATCGCT 804
Query 856 TTTAGTTGTGCCACAGGATCTGGATATCTCCAGCTCTTCTGTGCTGTGTGATGTTGATGA 915
| ||||| | |||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 805 TCTAGTTATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGA 864
Query 916 GCCAACCGTTCGAAGTCTTAATGGTTGTAGAGTTGCTGATCAGATTCTGAAACTCGTTCC 975
| ||| || || ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 865 ACAAACTGTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTTGTTCC 924
Query 976 AAATTTTGAGCACTTCCGGACAACTTTAAGATGCCTGAAGTATTGGGCTAAGAAGCGTGG 1035
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 925 AAATTCCGAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGG 984
Query 1036 CGTGTATTCAAATGTGACTGGATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCG 1095
|| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 985 GGTCTATTCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACG 1044
Query 1096 TGTCTGCCAGCTCTATCCAAATGCAATTCCTAGTATGCTGGTTTCTCG-TTTTTTCAGAG 1154
| |||||| | ||||||||||| |||||||||||| |||||||||| |||||| ||||
Sbjct 1045 CCTTTGCCAGTTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTT-AGAG 1103
Query 1155 TGTATACTCAATGGCGGTGGCCGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGC 1214
| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1104 TATATACACAATGGCGCTGGCCGAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGACC 1163
Query 1215 TTGGATTTCCTGTCTGGGACCCTCGTAAAAATCATCGTGACCGCTATCACCTTATGCCAA 1274
|| | |||||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1164 TTAGCTTTCCTGTTTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAA 1223
Query 1275 TAATAACTCCAGCTTACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTC 1334
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TAATAACTCCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTC 1283
Query 1335 GCGTTATGACAGAGCAGTTCCAGTTTGGTAACAATATCT-TGCAGGAGATTGAATTAAAT 1393
| |||||||||||||| ||||||||||| |||| |||| | ||||||||||| ||||||
Sbjct 1284 GTGTTATGACAGAGCAATTCCAGTTTGGCAACACGATCTGT-CAGGAGATTGAGTTAAAT 1342
Query 1394 AAACAGCACTGGAGCTCTTTATTTGAACAATATATGTTTTTCGAGGCATATAAAAACTAC 1453
||||| |||||||| || |||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1343 AAACAACACTGGAGTTCCTTATTTCAGCAATATATGTTCTTCGAGGCATATAAAAACTAC 1402
Query 1454 CTTCAGGTTGATATAGTGGCAGGAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTG 1513
|||||||||||| || | || | |||||| |||||||||||||| ||||| |||||||||
Sbjct 1403 CTTCAGGTTGATGTACTAGCTGCAGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTG 1462
Query 1514 GAGTCGCGGTTCAGACAGCTGACCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATG 1573
||||| |||||||| || |||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1463 GAGTCACGGTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATG 1522
Query 1574 TGCCATCCC-CAACCAAATGAGTATGTAGACACGGCTAGGCAGTTTCTG-CATTGTGCCT 1631
||||| ||| |||||||| |||||||||||||| | | |||||||| | ||||||||||
Sbjct 1523 TGCCA-CCCTCAACCAAACGAGTATGTAGACACTTCGAAGCAGTTTC-GACATTGTGCCT 1580
Query 1632 TTTTCATGGGCTTGCAGAGGGCAGAGGGAGTTGGTGGTCAAGAATGTCAACAATTTGATA 1691
||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 1581 TTTTCATGGGCTTGCAGAGGGCAGATGGATTTGGTGGCCAAGAATGTCAACAGTTTGATA 1640
Query 1692 TACGTGGTACGGTCGATGAGTTCAGACAAGAAGTAAACATGTATATGTTCTGGAAACCTG 1751
||||||| || || || || ||||| ||||| ||||||||||||||||| |||| |||||
Sbjct 1641 TACGTGGAACAGTGGACGAATTCAGGCAAGAGGTAAACATGTATATGTTTTGGAGACCTG 1700
Query 1752 GGATGGATGTGT-TCGTTTCTCATGTTCGTAGACGACAGCTTCC-TCCTTTTGTTTTCCC 1809
||||||||||| | |||||||||||||| ||||| |||||||| || ||||||||| ||
Sbjct 1701 GGATGGATGTGCAT-GTTTCTCATGTTCGAAGACGGCAGCTTCCATC-TTTTGTTTTTCC 1758
Query 1810 AAATGGATATCGAAGGCCTCGGCAGTCCAGGCACCAAAATCAACCGGGTGGAAAATCTGG 1869
|||||||||| |||| ||||||| || |||||||| | ||||| | || || ||||
Sbjct 1759 AAATGGATATAAAAGGTCTCGGCAATCAAGGCACCAGAGTCAACAATGCAGAGAACCTGG 1818
Query 1870 TGAAGATGGCACTGTTTCTC-ATTCTGGCTCTGTGGTGGAGAGGCATGCCAAGAGAAAGA 1928
||| || ||| || |||| || | | |||||| || |||| |||| ||||||||||
Sbjct 1819 TGATGAGGGCGTTGGTTCTTTATCC-GACTCTGT--TG-AGAGATATGCGAAGAGAAAGA 1874
Query 1929 ACGAT-AGTGAAATGATGGATGCGAGGCCAGAGAAACCTGAGAAGCGTGCATCTCT-TAG 1986
||||| | |||||| ||| || | ||||||||||||| ||||||||| |||||| | |||
Sbjct 1875 ACGATGA-TGAAATTATGAATTCCAGGCCAGAGAAACGTGAGAAGCGCGCATCT-TGTAG 1932
Query 1987 TCCACAGAGTCTAGATATAGTTTCTCCTGAAAGTAGTGCTATCACTACTGGTTGGACTCC 2046
|| ||| | ||| ||| || ||||||||| || |||| |||||||||| || |||||||
Sbjct 1933 TCTACATACTCTGGATGCAGCTTCTCCTGACAGCAGTGGTATCACTACTAGTGGGACTCC 1992
Query 2047 TC 2048
||
Sbjct 1993 TC 1994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151554334803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5