BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491421
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32840.1 | Symbols: PFK6 | phosphofructokinase 6 | chr4:1584... 2459 0.0
> AT4G32840.1 | Symbols: PFK6 | phosphofructokinase 6 | chr4:15844780-15848441
REVERSE LENGTH=1755
Length=1755
Score = 2459 bits (1331), Expect = 0.0
Identities = 1466/1527 (96%), Gaps = 26/1527 (2%)
Strand=Plus/Plus
Query 1 TTACTTCTATACCACTCTGAGCTCTGAG-ATT-----T---A-A-A-A-ATACGCTTCAA 47
|||||||||||||||||||||||||||| ||| | | | | | |||||||||||
Sbjct 17 TTACTTCTATACCACTCTGAGCTCTGAGAATTAAAACTCACATACATACATACGCTTCAA 76
Query 48 ATTCACATTCGCTTTACGTCACCGGAGA-AAAAACA--CAGAAGAATAAGG---TCTTCG 101
||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 77 ATTCACAGTCGCTTTACGTCACCGGAGAGAAAAACACTCAGAAGAATAAGGTTTTCTTCG 136
Query 102 ATGGCTTCTAATGGCGT---CGATG-AGATAAAGTTGGTGGAAGGACCTGCTGGTTATGT 157
||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||
Sbjct 137 ATGGCTTCTAATGGCGTGGACGA-GCAGATTAAGTTGGTGGAAGGACCTGCTGGTTATGT 195
Query 158 ACTCGAAGATGTTCCTCATTTGAGCGATTACATTCTCGATCTCCCCACTTATCCTAACCC 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 196 ACTCGAAGATGTTCCTCATTTGAGCGATTACATTCTCGATCTCCCCACTTATCCAAACCC 255
Query 218 GTTGCAATCGAATGCTGCTTATTCAGTAGTTAGGCAGTATTTTGTTGATGAGGATGATAC 277
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 256 GTTGCAATCAAATGCTGCTTATTCAGTAGTAAGGCAGTATTTTGTTGATGAGGATGATAC 315
Query 278 AGTCCAGGAAAAGATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGC 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AGTCCAGGAAAAGATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGC 375
Query 338 AGGACCGCGCCAAAAGGTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTG 397
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGGCCCGCGCCAAAAGGTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTG 435
Query 398 TGGAGGCCTATGCCCCGGGCTTAATACAGTAATCAGGGAGATCGTATGTGGTCTTCATTT 457
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 436 TGGTGGCCTATGCCCCGGGCTTAATACAGTTATCAGGGAGATCGTGTGTGGTCTTCATTT 495
Query 458 TATGTATGGTGTTACAGAAGTGATTGGTGTGGATTGCGGGTTTCGCGGGTTCTATTCCAA 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 496 TATGTATGGTGTTACAGAAGTGATTGGTGTGGATTGCGGGTTTCGCGGGTTCTATTCTAA 555
Query 518 AAACACTGTTGCACTAACGCCGAAGACTGTGAGTGACATCCACAAGCGCGGGGGAACCAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AAACACTGTTGCACTAACGCCGAAGACTGTGAGTGACATCCACAAGCGCGGGGGAACCAT 615
Query 578 ACTAGGAACCTCCCGCGGGGGGCATGATACATCGAAGATTGTTGACAACATACAAGATCG 637
||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 616 ACTAGGAACCTCCCGAGGGGGACATGATACATCAAAGATTGTCGACAACATACAAGATCG 675
Query 638 CGAAATAAATCAGGTTTACATTATTGGAGGTGATGGAACCCAAAAGGGAGCAAGTGCAAT 697
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 676 TGAAATAAATCAGGTTTACATTATTGGAGGTGATGGAACCCAAAAGGGAGCAAATGCAAT 735
Query 698 ATACAAGGAAATTAGGCGCCGTGGACTTAATGTTGCAGTTGCAGGAATACCAAAAACCAT 757
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 736 ATATAAGGAAATTAGGCGCCGTGGACTTAAAGTTGCAGTTGCAGGAATACCAAAAACCAT 795
Query 758 TGACAACGACATCCCAGTCATTGACAAGTCCTTTGGATTTGATACTGCGGTTGAGGAGGC 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TGACAACGACATCCCAGTCATTGACAAGTCCTTTGGATTTGATACTGCGGTTGAGGAGGC 855
Query 818 TCAACGTGCTATTAATGCAGCGCATGTTGAAGCGACCAGTGTGGAAAACGGCATTGGACT 877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 856 TCAACGTGCTATTAATGCAGCGCATGTTGAAGCGACCAGTGTGGAAAACGGCATTGGAAT 915
Query 878 TGTCAAGCTAATGGGTCGCTACAGTGGGTTCATTGCAATGTATGCAACTCTGGCTAGCCG 937
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 916 TGTCAAGCTAATGGGTCGGTACAGTGGGTTCATTGCAATGTATGCTACTCTGGCTAGCCG 975
Query 938 AGACGTTGACTGCTGTCTGATTCCCGAGTCACCCTTTTACCTTGAAGGCAAAGGAGGGCT 997
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AGATGTTGACTGCTGTCTGATTCCCGAGTCACCCTTTTACCTTGAAGGCAAAGGAGGGCT 1035
Query 998 CTATGAGTTCATTGCAAAACGGCTCAGAGAAAATGGCCACATGGTTATAGTGATTGCTGA 1057
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CTATGAGTTCATTGCAAAACGTCTCAGAGAAAATGGCCACATGGTTATAGTGATTGCTGA 1095
Query 1058 AGGGGCAGGGCAGGATCTTGTTGCAGAGAGCATTGATCAACAAGATGCTTCAGGAAACAA 1117
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 AGGAGCAGGACAGGATCTTGTTGCAGAGAGCATTGAACAACAAGATGCTTCAGGAAACAA 1155
Query 1118 GCTCCTTAAAGATGTAGGACTATGGATGAGTCTTAAAATCAAGGAACACTTTGCGAAGCA 1177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1156 GCTCCTTAAAGATGTAGGACTATGGATGAGTCTTAAAATCAAGGAATACTTTGCGAAGCA 1215
Query 1178 GAGTGTAATGGACATTACTCTCAAATACATTGATCCGACATACATGATCCGAGCTATTCC 1237
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CAATGTAATGGACATTACTCTTAAATACATTGATCCGACATACATGATCCGAGCTATTCC 1275
Query 1238 AGCCAATGCATCTGACAACGTCTACTCAACTCTCCTTGCCCAAAGCGCAGTCCATGGTGC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AGCCAATGCATCTGACAACGTCTACTCAACTCTCCTTGCCCAAAGCGCAGTCCATGGTGC 1335
Query 1298 AATGGCTGGCTATACCGGCTTCGTCTCTGGTCTTGTTAATGGAAGGCACACCTACATTCC 1357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AATGGCTGGCTATACCGGCTTTGTCTCTGGTCTTGTTAATGGAAGGCACACCTACATTCC 1395
Query 1358 CTTTAACCGAATAACGGAAAGACAGAACAAAGTTGTGATTACAGACAGAATGTGGGCGCG 1417
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1396 CTTTAACCGAATAACCGAAAGACAGAACAAAGTTGTGATTACAGATAGAATGTGGGCGCG 1455
Query 1418 AATGTTGTCATCTACAAACCAGCCCAGCTTCATGAACCCCTCCTAAAGGAACCACGGAGT 1477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1456 AATGTTGTCATCTACAAACCAGCCCAGCTTCATGAACCC-TCCTAAAGGAACCACGGAGT 1514
Query 1478 TTACGGACTAATAGCCAAAATTGtttt 1504
|||| |||||||||| |||||| ||||
Sbjct 1515 TTACCGACTAATAGCAAAAATT-TTTT 1540
Score = 99.0 bits (53), Expect = 1e-19
Identities = 56/57 (98%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1498 TTG-ttttttttGCATCACCATTAATGATATTCTGTCTTGTTATCTTCTTCGTCTCT 1553
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TTGATTTTTTTTGCATCACCATTAATGATATTCTGTCTTGTTATCTTCTTCGTCTCT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5