BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491427
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32790.1 | Symbols: | Exostosin family protein | chr4:15812... 2868 0.0
> AT4G32790.1 | Symbols: | Exostosin family protein | chr4:15812095-15814987
FORWARD LENGTH=1925
Length=1925
Score = 2868 bits (1553), Expect = 0.0
Identities = 1717/1796 (96%), Gaps = 12/1796 (1%)
Strand=Plus/Plus
Query 27 AGTATACGAGTCAGAAGAAGCAATGAAATTGTTAAGATTTGCTGGTCTTGTTTTCATTTT 86
||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AGTTTAGGAGTCAG-A-AAGCAATGAAATTGTTAAGATTTGCTGGTCTTGTTTTCATTTT 186
Query 87 TATCTCAACCTTCCAATTCGTGAACATCCGTTATTATGGTGGTTCTATGTTCTCTTTATC 146
|||| |||||||||| || |||||||| ||||||||||||||| ||| |||||||||||
Sbjct 187 TATCACAACCTTCCAGTTTGTGAACATACGTTATTATGGTGGTGATATATTCTCTTTATC 246
Query 147 TTCTCAAGATAAGTTTCCAGTATCATCATCAATTGATGTAAGCACAGAACCCGTAAGGAC 206
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 247 TTCTCAAGATAAGTTTCCAG-----T-ATCAATTGATGTAAGCACAGAACCCGTAAGCAC 300
Query 207 GTTGTCCGGTCCTGAAAGATTGAATTTTAGTAGTTCGAGATCCATTGAGGTAGATGAAGA 266
|||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 301 GTTGTCCGGTCCTGAAAGATTGAATTCTAGTAGTTCAAGATCCGTTGAGGTAGATGAAGA 360
Query 267 GGAAAGCACCGGATTAGAAGAAGACCATGTGATTGG-TTCTGATAAGAATGACACAGTTC 325
|||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 361 GGAAAGCACCGGTTTAAAAGAAGACCATGTGATTGGCTT-TGATAAGAATGACACAGTTC 419
Query 326 AAGCCCATGATAGTTTCATTGAGGATGTCAAAGATAAGGAAACTCTTGATTTGCTTCCTG 385
||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 420 AAGGCCATGATAGTTTCGTAGAGGATGTCAAAGATAAGGAAACTCTTGATTTGCTTCCAG 479
Query 386 GAA-TAAGGAGCAGCACCAACGAGACTTACGAGAAAATAGTAGAAGATGCTGACACTGCT 444
||| || ||||||| | ||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 480 GAACCAA-GAGCAGCTCAAACGAGAGTTACGAGAAAATAGTAGAAGATGCTGATATTGCT 538
Query 445 TTTGAAAATACTAGGAAAGTGGAGATTCTGGAGAGCAAGTCTGATCCTTCTGTTGATAAT 504
|||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 TTTGAAAATATTAGGAAAATGGAGATTCTGGAGAGTAAGTCTGATCCTTCTGTTGATAAT 598
Query 505 CTTTCCTCAGAGGTGAAAAGGTTTATGAAGGTTTCGAATTCTGGGGTGGTTTCTATCACT 564
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 599 CTTTCCTCAGAGGTGAAAAAGTTTATGAATGTTTCAAATTCTGGGGTGGTTTCTATCACT 658
Query 565 GAGATGATGAATTTACTGCATCAAAGCCACACTTCTCATGTCTCGCTGAAATTAAAACAG 624
|||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |
Sbjct 659 GAGATGATGAATTTACTGCATCAAAGCCGCACTTCTCATGTCTCACTGAAAGTAAAACGG 718
Query 625 TCTTCCACAGTTGATCAAGAGCTGTTATATGCAAGATCTCAAATTGAGAACCCACCGCTG 684
||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 TCTTCCACAATTGATCATGAGCTGTTATATGCAAGAACTCAAATTGAGAACCCACCGCTG 778
Query 685 ATAGAGAACGACCCTTTACTGCATACTCCTCTGTATTGGAATCTGTCCATGTTCAAAAGG 744
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 ATAGAGAACGACCCTTTACTGCATACTCCTCTGTATTGGAATCTCTCCATGTTCAAAAGG 838
Query 745 AGCTACGAGCTAATGGAGAGAAAGCTCAAAGTATATGTCTACAGGGAAGGCAAAAGACCC 804
||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 839 AGCTATGAGCTAATGGAGAAAAAGCTCAAGGTATATGTCTACAGGGAAGGCAAAAGACCT 898
Query 805 GTACTGCATAAGCCGGTGCTGAAAGGAATATATGCTTCTGAGGGGTGGTTTATGAAACAA 864
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 899 GTACTGCATAAGCCGGTGCTGAAAGGAATATATGCTTCTGAAGGATGGTTTATGAAACAA 958
Query 865 CTCAAGTCCAGCAGAACATTTGTCACAAAAGACCCACGTAAAGCTCACCTATTTTATCTT 924
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 CTCAAGTCCAGCAGAACATTTGTCACAAAAGACCCTCGTAAAGCTCACCTATTTTATCTT 1018
Query 925 CCTTTCAGCTCCAAAATGTTGGAAGAAACTCTGTATGTCCCAGGTTCTCACAGCGATCAG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 CCTTTCAGCTCCAAAATGTTGGAAGAAACTCTGTATGTCCCAGGTTCTCACAGCGATAAG 1078
Query 985 AATCTCATTCAGTTCTTGAAAAACTACCTGGACATGATTTCTTCGAAATATAATTTCTGG 1044
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 1079 AATCTCATTCAGTTTTTGAAGAACTACCTGGACATGATTTCTTCCAAATATAGTTTCTGG 1138
Query 1045 AATAAAACTGGAGGATCAGATCATTTTCTGGTTGCTTGCCACGACTGGGCTCCTTCCGAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AATAAAACTGGAGGATCAGATCATTTTCTGGTTGCTTGCCACGACTGGGCTCCTTCCGAG 1198
Query 1105 ACGAGGCAGTACATGGCCAAGTGCATCAGAGCATTATGCAATTCTGATGTTTCAGAAGGT 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACGAGGCAGTACATGGCCAAGTGCATCAGAGCATTATGCAATTCTGATGTTTCAGAAGGT 1258
Query 1165 TTTGTGTTTGGTAAAGATGTAGCTCTTCCTGAGACAACTATTCTTGTTCCAAGGAGACCG 1224
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1259 TTTGTGTTCGGTAAAGATGTAGCTCTTCCTGAGACGACTATTCTTGTTCCTAGGAGACCG 1318
Query 1225 CTTAGGGCTCTCGGAGGCAAACCTGTTTCACAAAGGCAAATACTTGCCTTCTTTGCTGGT 1284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 CTTAGGGCTCTCGGAGGCAAACCTGTTTCACAAAGGCAAATACTTGCCTTCTTTGCAGGC 1378
Query 1285 GGAATGCACGGTTACCTTAGACCTCTCCTATTACAAAACTGGGGAGGTAACAGAGATCCA 1344
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1379 GGAATGCACGGTTACCTTAGACCTCTCCTATTGCAAAACTGGGGAGGAAACAGAGATCCA 1438
Query 1345 GACATGAAAATATTCAGTGAGATACCCAAATCTAAAGGAAAAAAGAGTTACATGGAGTAC 1404
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1439 GACATGAAAATATTCAGTGAGATACCCAAATCTAAAGGGAAAAAGAGTTACATGGAGTAC 1498
Query 1405 ATGAAGAGCAGCAAGTATTGCATCTGCCCAAAAGGGCACGAAGTCAATAGCCCTCGGGTC 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATGAAGAGCAGCAAGTATTGCATCTGCCCAAAAGGGCACGAAGTCAATAGCCCTCGGGTC 1558
Query 1465 GTGGAGGCATTGTTCTATGAGTGTGTCCCGGTTATCATATCCGATAACTTTGTACCTCCC 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GTGGAGGCATTGTTCTATGAGTGTGTCCCGGTTATCATATCCGATAACTTTGTACCTCCC 1618
Query 1525 TTCTTCGAAGTTCTGAATTGGGAGGCTTTTGCGGTATTTGTCTTGGAAAAAGATATTCCT 1584
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1619 TTCTTCGAAGTTCTGAATTGGGAGTCTTTTGCGGTATTTGTCTTGGAGAAAGATATTCCT 1678
Query 1585 GACTTGAAGAACATATTAGTGTCCATAACTGAGGAAAGGTATAGAGAGATGCAGATGAGA 1644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GATTTGAAGAACATATTAGTGTCCATAACTGAGGAAAGGTATAGAGAGATGCAGATGAGA 1738
Query 1645 GTCAAGATGGTGCAGAAGCATTTCCTTTGGCATTCTAAACCCGAGAGATTCGATATATTT 1704
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1739 GTCAAGATGGTGCAGAAGCATTTCCTTTGGCATTCTAAACCTGAGAGATTCGATATATTT 1798
Query 1705 CATATGATACTTCACTCTATTTGGTACAATAGAGTTTTTCAAAGCTAAAACCACAGAGTA 1764
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1799 CATATGATACTTCACTCCATTTGGTACAATAGAGTTTTTCAAATTTAAAACCACAGAGTA 1858
Query 1765 GGTTTGTGACTGTAGAACAAGTAACTAACAGAGATTCATGCGTTAATATAGCAAAA 1820
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1859 GGTTTGTGACTGTAGAACAAGTAACTAACAGAGATTCATTCGTTAATATAGCAAAA 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90059777730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5