BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491429
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32780.1 | Symbols: | phosphoinositide binding | chr4:15808... 1397 0.0
> AT4G32780.1 | Symbols: | phosphoinositide binding | chr4:15808852-15810907
FORWARD LENGTH=887
Length=887
Score = 1397 bits (756), Expect = 0.0
Identities = 840/881 (95%), Gaps = 4/881 (0%)
Strand=Plus/Plus
Query 1 GGAATCAA-TTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GGAATCAATTTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 67
Query 60 ATCAACAATGACAAGTTTGCACAAAACCCTCTTCACACAAAATCCTACTACTTTAGATCA 119
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 ATCAACAATGACAAGCTTGCACAAAACCCTCTTCACACAAAATCCCACTACTTTAGATCA 127
Query 120 ACTAATGATGTGCCATACGGGAAGAGATAATTCATGGAAAAAACTAGAGAACATAGACGA 179
||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 128 ACTCATGATGTGCCACACGGGAAGAGACAATTCATGGAAAAAACTAGAAAACATAGACGA 187
Query 180 AGAAGGTCCAGCGGCGGTGGCACGTGAAGTGAAGACGGCGTTACCACCGGAGACGCCAAC 239
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 188 AGAAGGTCCATCGACGGTGGCACGTGAAGTGAGGACGGCGTTACCACCGGAGACGCCAAC 247
Query 240 GGAGACGATGGAGTTTTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACAAGAGC 299
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 248 GGAGATGATGGAGTTCTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACGAGAGC 307
Query 300 TTTCTTCAACAATTCCACTGCCGACACCAACTCTTTTCTTCTATCTACTATTGTTAACAC 359
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 308 TTTTTTCAACAATTCCACTGCCGACACTAACTCTTTTCTTCTATCTACTATCGTTAACAC 367
Query 360 CAACAAAGAAGACAGAGAAAATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CAACAAAGAAGACAGAGAAGATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 427
Query 420 TCTGCTGCCACATATGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGCAGAGA 479
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 428 TCTGCTGCCACATGTGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGTAGAGA 487
Query 480 AATGAAGCATTTGTACAAGAGCATGATaagaggaagaacaatgggaagaagattaaagga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AATGAAGCATTTGTACAAGAGCATGATAAGAGGAAGAACAATGGGAAGAAGATTAAAGGA 547
Query 540 tcagaaggagaagaagaaacaagagaCCCGAACTCGCAACGCTGAGATTCACGCCGCGGT 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 548 TCAGAAGGAGAAGAAGAAACAAGAGACCAGAACTCGCAACGCTGAGATTCACGCCGCGGT 607
Query 600 CTCTGTCGCAGGAGTAGCCGCGGTTGTAGCCGCAACCGCAGCATCTAACGCTATTGCGGC 659
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 608 CTCTGTCGCAGGAGTAGCTGCAGTTGTTGCCGCAACCGCAGCATCTAACGCTATTGCGGC 667
Query 660 TGCAGA-GCATGCGGTTGAATCAACAACCGTTGCAGCTGCGGTGGCGTCTGCAGCTGCTC 718
||||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 668 CGCAGAAG-ATGCGGTTGAATCAACAACCGTTGCAGCTGCAATGGCATCTGCAGCTGCTC 726
Query 719 TTATCGCTTCACATTGCATCGAGATAGCAGGAGAGATAGGGGCGGGTTATAACCAGATTG 778
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 727 TCATCGCTTCACATTGCATCGAGATAGCGGGAGAGATTGGGGCGGGTTATAACCAGATTG 786
Query 779 CCACGGCTGTTAGCTCCGCGACCAACGCCAGGACTAACGGAGACGTTATGGCTTTAACGG 838
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 787 CCACGGCTGTTAGCTCCGCGACCAATGCTAGGACTAACGGAGACATTATGGCTTTAACGG 846
Query 839 CAAGTGCTGCGACAGGTACTAATGTCTTGTTATCTCGCATA 879
|||||||||| ||||||| | || | ||||| |||||||||
Sbjct 847 CAAGTGCTGCAACAGGTA-TCATTTATTGTTTTCTCGCATA 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5