BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491430
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chlor... 2381 0.0
> AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chloroplast
/ vitamin E deficient 1 (VTE1) / sucrose export defective
1 (SXD1) | chr4:15804914-15807982 FORWARD LENGTH=1726
Length=1726
Score = 2381 bits (1289), Expect = 0.0
Identities = 1526/1632 (94%), Gaps = 49/1632 (3%)
Strand=Plus/Plus
Query 1 TCTTCTATTATGGAGATACGGAGCTTGATTGTTTCTTTGAACCCTAATTTCTCTTCCTTT 60
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 59 TCTTCCATTATGGAGATACGGAGCTTGATTGTTTCTATGAACCCTAATTTATCTTCCTTT 118
Query 61 GAGCTCTCTCGCCCTG---------TCACTCGCT--C-A----C--TCCGATCGGCTAAA 102
|||||||||||||||| ||||||||| | | | |||||||| |||||
Sbjct 119 GAGCTCTCTCGCCCTGTATCTCCTCTCACTCGCTCACTAGTTCCGTTCCGATCGACTAAA 178
Query 103 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACTCCGTCCT-CTGACAC 161
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 179 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACCCCG-AATAGTGAAAC 237
Query 162 TGACAAGATCTCCGTGAAACCTGTTTACGTCCCGACGCCCCCCAATCGTGAGCTCCGGAC 221
||||||||||||||| ||||||||||||||||||||| | |||||||| || ||||||||
Sbjct 238 TGACAAGATCTCCGTTAAACCTGTTTACGTCCCGACGTCTCCCAATCGCGAACTCCGGAC 297
Query 222 TCCTCACAGTGGATACCATTTCGATGGAACAGCTAGGAAGTTCTTCGAGGGATGGTATTT 281
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 298 TCCTCACAGTGGATACCATTTCGATGGAACACCTCGGAAGTTCTTCGAGGGATGGTATTT 357
Query 282 CAGGGTTTCAATTCCAGACAAGAGGGAGAGTTTTTGCTTTATGTATTCTGTGGAGAATCC 341
||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 CAGGGTTTCCATCCCAGAGAAGAGGGAGAGTTTTTGTTTTATGTATTCTGTGGAGAATCC 417
Query 342 TGCATTTCGCCAGAGATTGTCACCATTGGATGTGGCTCTTTATGGACCTAGATTCACTGG 401
||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 418 TGCATTTCGGCAGAGTTTGTCACCATTGGAAGTGGCTCTATATGGACCTAGATTCACTGG 477
Query 402 TGTCGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATAC-ACGCAAGAGT 460
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 478 TGTTGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATACGA-ACAAGACT 536
Query 461 CTCACAACTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 520
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCACAATTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 596
Query 521 CAGGCGCAAAGTCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGGGTGTCCG 580
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 CAGGCGCAAAGGCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGAGTGTCCG 656
Query 581 AAGGGTTCCAAGCTACCCCATTTTGGCATCAAGGTCACATTTTCGATGATGGCCGGACTG 640
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 657 AAGGGTTCCAAGCTACTCCATTTTGGCATCAAGGTCACATTTGCGATGATGGCCGTACTG 716
Query 641 ACTATGCGGAAACGGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCTGTTTACGGTT 700
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 ACTATGCGGAAACTGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCCGTTTACGGTT 776
Query 701 GGGGTGATGTTGGGGCCAAACAGAAGTCTACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 760
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 GGGGTGATGTTGGGGCCAAACAGAAGTCAACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 836
Query 761 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTGTCCACAGGGTGGATAGAATGGG 820
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTTTCCACAGGGTGGATAGAATGGG 896
Query 821 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 956
Query 881 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAAGTGGAGAAG 940
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAACTGGAGAAG 1016
Query 941 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAGTTGCCTGGATTGACTGAGACCTATGAAA 1000
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAATTGCCTGGATTGACTGAGACCTATGAAA 1076
Query 1001 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAATTGTACGAGTTTGTTCCGTGGAATG 1060
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1077 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAAATGTACGAGTTTGTTCCTTGGAATG 1136
Query 1061 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAAAATGAGA 1120
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1137 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAGAACGAAA 1196
Query 1121 CCCATATGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACCATGTGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1256
Query 1181 CCACAGAAGTTGGGCTAGCAACGGCTTGCAGAGATAGTTGTTACGGTGAGTTGAAGTTGC 1240
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 CCACAGAAGTTGGGCTAGCTACGGCTTGCAGAGATAGTTGTTACGGTGAATTGAAGTTGC 1316
Query 1241 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1376
Query 1301 CAATGGCAGCGGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACAA 1360
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1377 CAATGGCAGCAGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACGA 1436
Query 1361 GCAACACCCCCAAGCTACTCAAACAGGCTCTTCAGGTCCCATTGGATCTTGGAAGCGCCT 1420
||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1437 GCAACACGCCCGAGCTACTAAAACAGGCTCTTCAGGTCCCATTGGATCTTGAAAGCGCCT 1496
Query 1421 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTTTGTAACATTGATGAGTGTTTTGTTTGT 1480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTCTGTAACATTGATGAGTGTTTTGTTTGT 1556
Query 1481 TGATAGAGA---A-GT--T-A-TG-----T----CAT-T----GCTAGCTTCACTA--AT 1516
||||||||| | || | | || | ||| | ||||||||||||| ||
Sbjct 1557 TGATAGAGACCCATGTGATGAATGAAGCCTTAGTCATGTCATTGCTAGCTTCACTATTAT 1616
Query 1517 CT--GTATGATTT-AGTTCGTTCGGTCCTTGTGGTAAATTATACGGGCCAGTGTAAAGTC 1573
| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 GTATGTATGATTTTAGTTCGTTCGGTCCTTGTGGTAAATGATACGGGCCAGTGTAAAGTC 1676
Query 1574 TAGTTCAATAAA 1585
||||||||||||
Sbjct 1677 TAGTTCAATAAA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5