BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491433
Length=3426
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | ... 5199 0.0
> AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1
| Homeodomain-like protein | chr4:15790345-15795854 FORWARD
LENGTH=3507
Length=3507
Score = 5199 bits (2815), Expect = 0.0
Identities = 3221/3414 (94%), Gaps = 40/3414 (1%)
Strand=Plus/Plus
Query 31 ctctctctctctcgact-tcgatttcgatttcgatttgtgttcttcttcttcttcttcgt 89
||||||||||||| || |||| ||||||||||||||||| ||||||||||||||| |
Sbjct 112 CTCTCTCTCTCTC-TCTCTCGACTTCGATTTCGATTTGTG---TTCTTCTTCTTCTTCAT 167
Query 90 ctggattcACAGCGTCTTAATTACTT-TGATTAATATTT--ATCTTTGTTTCAGAT-TG- 144
|||||||| ||||||||||||||||| ||||||| ||| | || | || ||| ||
Sbjct 168 CTGGATTCTCAGCGTCTTAATTACTTCAGATTAAT-TTTGGA-ATTCG-TT--GATCTGC 222
Query 145 TAGTATTGTGCTTCGCTTATGATGATTTGTAAGTCATATCAAAGAGACCGACTTTGGGAT 204
|| | |||||||||||||||||||||| |||| ||||||||||| || ||||||||| |
Sbjct 223 AAGCAATGTGCTTCGCTTATGATGATTTCTAAGACATATCAAAGAAACGGACTTTGGGGT 282
Query 205 TTTTCATATCGCTTTCCTTGCTAACTATGAAGCGTGAGATGAAAGCTCCTAATACTCCAC 264
||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 283 TTTTCATATTGCTTTCCTTGCTAACTATGAAGCGTGAGATGAAAGCACCTACTACTCCAC 342
Query 265 AAGAGAGTCTCCAA-GTCGACCTGAAAGGAAAACAAGGGAGGACATCTGGCCCTGCTAGA 323
||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 343 TAGAGAGTCTCCAAGGT-GACCTCAAAGGAAAACAAGGGAGGACATCTGGCCCTGCTAGA 401
Query 324 CGATCCACCAAAGGACAATGGACACCCGAAGAGGACGAAGTTTTGTGTAAAGCTGTTGAG 383
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 402 CGATCTACCAAAGGACAATGGACACCTGAAGAGGACGAAGTCTTGTGTAAAGCTGTTGAG 461
Query 384 CGTTTTCAAGGAAAGAACTGGAAGAAGATAGCTGAATGTTTTAAGGATCGGACTGATGTC 443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CGTTTTCAAGGAAAGAACTGGAAGAAGATAGCTGAATGTTTTAAGGATCGGACTGATGTT 521
Query 444 CAGTGTCTTCATAGATGGCAAAAGGTCTTGAACCCAGAGCTTGTGAAAGGACCGTGGTCA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CAGTGTCTTCATAGATGGCAAAAGGTCTTGAACCCAGAGCTTGTGAAAGGACCGTGGTCA 581
Query 504 AAAGAGGAGGATAACACAATAATTGACCTGGTTGAAAAATATGGGCCAAAGAAATGGTCT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAAGAGGAGGATAACACAATAATTGACCTGGTTGAAAAATATGGGCCAAAGAAATGGTCT 641
Query 564 ACTATATCTCAGCATTTACCTGGGCGCATAGGAAAGCAATGTAGGGAAAGGTGGCATAAC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ACTATATCTCAGCATTTACCTGGGCGCATAGGAAAGCAATGTAGGGAAAGGTGGCATAAC 701
Query 624 CATCTTAACCCTGGGATTAATAAAAATGCATGGACTCAAGAAGAGGAACTTACTCTTATT 683
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 702 CATCTTAACCCTGGGATTAATAAAAATGCATGGACTCAGGAAGAGGAACTGACTCTTATT 761
Query 684 CGTGCGCATCAAATTTATGGGAATAAATGGGCAGAGCTTATGAAATTTTTGCCAGGAAGG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CGTGCGCATCAAATTTATGGGAATAAATGGGCAGAGCTTATGAAATTTTTGCCAGGAAGG 821
Query 744 TCAGATAATTCGATAAAAAATCACTGGAACAGCTCAGTTAAGAAGAAGTTGGATTCCTAC 803
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 822 TCAGATAATTCGATAAAAAATCATTGGAACAGCTCAGTTAAGAAGAAGTTGGATTCCTAC 881
Query 804 TATGCATCAGGTCTTTTAGATCAGTGTCAAAGCTCACCATTAATTGCCCTTCAGAACAAA 863
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 882 TATGCATCAGGTCTTTTAGATCAGTGTCAAAGCTCGCCATTAATTGCCCTTCAGAACAAA 941
Query 864 TCTATCGCTTCATCTTCCTCGTGGATGCACAGCAGTGGAGATGAAGGTAATTCAAGGCCA 923
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 942 TCTATCGCTTCATCTTCCTCGTGGATGCACAGCAATGGAGATGAAGGTAGTTCAAGGCCA 1001
Query 924 GGGGTTGATGCTGAAGAATCAGAATGCAGCCAAGCTTCAACTGTTTTCTCACAATCAACC 983
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGGGTTGATGCTGAGGAATCAGAATGCAGCCAAGCTTCAACTGTTTTCTCACAATCAACC 1061
Query 984 AACGATTTACAAGATGAGGTTAAACCTGGAAATGAGGAATATTACATCCCTGAATTTCAT 1043
||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct 1062 AACGATTTACAAGATGAAGTTCAACGTGGAAATGAGGAATATTACATGCCTGAATTTCAT 1121
Query 1044 TCGGGAACAGAGCAGCAAATCTCAAACGCTGCATCTCATGCAGAAGTGTACTACCCTTCC 1103
|| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1122 TCAGGAACGGAGCAGCAAATCTCAAACGCTGCATCTCATGCAGAACCGTACTACCCTTCC 1181
Query 1104 TTTGAAGATGTCAAAATTGTTGTCCCCGAAATTTCTTGTGAAGCAGAATGCTCAAAGAAG 1163
||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1182 TTTAAAGATGTCAAAATTGTTGTCCCCGAAATTTCTTGTGAAACAGAATGTTCGAAGAAG 1241
Query 1164 ATTCAGAATCGTAATTGTTCTCACGAGGTTAGAACTACCACAGCTGCTGAGGATCAATTG 1223
||||||||| |||||||||||||||| | ||||||||||||||| | ||||||||||||
Sbjct 1242 TTTCAGAATCTTAATTGTTCTCACGAGCTAAGAACTACCACAGCTACGGAGGATCAATTG 1301
Query 1224 CAGGGTGTATCTAATGATGCTAAACAGGACC-TCGATCTAGATTTATTGACCCATAACAT 1282
| ||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||
Sbjct 1302 CCGGGTGTATCTAATGATGCTAAACAGGACCGTGG-TCTAGAGTTATTGACCCATAACAT 1360
Query 1283 GGACAACTACGGAAAAAATCAAGCACTTCAACAAGCTTTTCAAAGTTCAGTAAGATTAAG 1342
||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1361 GGACAACGGTGGAAAAAACCAAGCACTTCAACAAGATTTTCAAAGTTCAGTAAGATTAAG 1420
Query 1343 TGATCAACCTTCTTTGCCAAACTCGGACACAGATCCAGAAGCTCAAACTTTGATCACGGA 1402
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TGATCAACCTTTTTTGTCAAACTCGGACACAGATCCAGAAGCTCAAACTTTGATCACGGA 1480
Query 1403 TGAGGAGTGTTGTAGGGTTCTTTTTCCTGATA-CTGTGAAAGATAGCAGTATATCTTCTT 1461
||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||
Sbjct 1481 TGAGGAGTGTTGTAGGGTTCTTTTTCCAGATAACA-TGAAAGATAGCAGTACATCTTCTG 1539
Query 1462 GTGAACAAGGTCGGAATATGGTTGACCTTCAAAAGGGCAAAGGATCTCTTTGTTCTCAGG 1521
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1540 GTGAGCAAGGTCGGAATATGGTTGACCCTCAAAACGGCAAAGGATCTCTTTGTTCTCAGG 1599
Query 1522 CTGCAGAAACCCAGGATCATGAAACTGGGAAACCTACAGCTTTGTCC-TGGCATCCTTCA 1580
||||||||||||| | |||||||||||| ||| | ||||||| || ||||||||||||
Sbjct 1600 CTGCAGAAACCCATGCTCATGAAACTGGAAAAGTTCCAGCTTTA-CCGTGGCATCCTTCA 1658
Query 1581 AGTTCTGAGGGCCTGGCGGGTCATAATTGTGTCCCTTTGTTAAATTCAGACTTGAAGGAC 1640
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1659 AGTTCTGAGGGCCTGGCGGGTCATAATTGTGTCCCTTTGTTGGATTCAGACTTGAAGGAC 1718
Query 1641 TCACTTTTACTCTGTAATGATTCCAACGCTCCTATACAAGGTTGTCACCTTTTTGGAGCT 1700
|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1719 TCACTTTTACCCCGTAATGATTCCAACGCTCCTATACAAGGTTGTCGCCTTTTTGGAGCT 1778
Query 1701 ACTGAATTAGAACGTAAAACTGATACAAATGACGGTTTCATCGACACTGATGGACATGTA 1760
|| ||||||||| |||| |||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1779 ACCGAATTAGAATGTAAGACTGATACAAATGACGGTTTCATCGATACTTACGGACATGTA 1838
Query 1761 ACTTCCCATGGCAATGATGATAATGATGGCATCCCAGAACAACAGGGGCTGTCATATATT 1820
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1839 ACTTCCCATGGCAATGATGATAATGGTGGTTTCCCAGAACAACAGGGGCTGTCATATATT 1898
Query 1821 CCCAAGGATTCTTTGAAGCTAGTACCTCTGAATAGTTTTTCTTCTCCTTCTAGAGTGAAC 1880
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1899 CCCAAGGATTCTTTGAAGCTAGTACCTTTGAATAGTTTTTCTTCTCCTTCTAGAGTGAAC 1958
Query 1881 AAGATTTATTTTCCTATCGATGATAAGCCAGCTGAAAAAGATAAAGGAGCTCTGTGTTAT 1940
||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1959 AAGATTTATTTTCCTATTGACGATAAGCCGGCTGAAAAAGACAAAGGAGCTCTTTGTTAT 2018
Query 1941 GAACCTCCACGTTTTCCAAGTGCAGATATTCCTTTCTTCAGCTGTGATCTTGTACCATCA 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GAACCTCCACGTTTTCCAAGTGCAGATATTCCTTTCTTCAGCTGTGATCTTGTACCATCA 2078
Query 2001 AATAGTGACTTACGGCAAGAGTACAGTCCCTTTGGTATCCGCCAGTTGATGATTTCTTCA 2060
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2079 AATAGTGACTTACGGCAAGAGTACAGTCCCTTTGGTATCCGTCAGTTGATGATTTCTTCA 2138
Query 2061 ATGAATTGTACAACTCCGTTAAGGTTATGGGATTCACCGTGTCACGATAGGAGCCCTGAT 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 ATGAATTGTACAACTCCGTTAAGGTTATGGGATTCACCGTGTCACGATAGGAGCCCTGAT 2198
Query 2121 GTCATGCTTAATGATGCTGCCAAAAATTTTAGTGGTGCACCATCCATCTTAAAGAAGCGG 2180
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2199 GTCATGCTTAATGATACTGCCAAAAGTTTTAGTGGTGCACCATCCATCTTAAAGAAGCGG 2258
Query 2181 CATCGAGACTTGCTGTCACCTGTGCTTGATAGAAGAAAAGACAAAAAGCTTAAAAGGGCT 2240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 CATCGAGACTTGCTTTCACCTGTGCTTGATAGAAGAAAAGACAAAAAGCTTAAAAGGGCT 2318
Query 2241 GCGACTTCCTCCTTGGCTAATGATTTTTCTCGCTTAGATGTAATGCTTGATGAAGGAGGT 2300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2319 GCGACTTCCTCCTTGGCTAATGATTTTTCGCGCTTAGATGTAATGCTTGATGAAGGAGAT 2378
Query 2301 GATTGCATGTCCTCTCGTCTGTCAGAATCTCCTGAAAATGAAAATAGATGTGCCTCCCCT 2360
||||||||| ||||||||| |||||| ||||||||| || |||||| |||||||||||||
Sbjct 2379 GATTGCATGACCTCTCGTCCGTCAGAGTCTCCTGAAGATAAAAATATATGTGCCTCCCCT 2438
Query 2361 TCCAAAGCCAAAGATAACAGAAATTCTGCATCAGGTCGGTCAGATCAAGAAATGATTCCG 2420
|||| ||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||
Sbjct 2439 TCCATAGCCAGAGATAACAGAAATTGTGCATCAGCTCGGTTATATCAAGAAATGATTCCG 2498
Query 2421 ATAGATGAGGAACCAAAGGAAACCTTAGAGTCAGGTGGAGTGACTTCTATGCAAAATGAA 2480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2499 ATAGATGAGGAACCAAAGGAAACCTTAGAATCAGGTGGAGTGACTTCTATGCAAAATGAA 2558
Query 2481 AAGGGATGTAATGACGGTGATGCTTCAGCTAAAAATGACCAAGAAACTTCTGGAAGTTTT 2540
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 AATGGATGTAATGACGGTGGTGCTTCAGCTAAAAATGACCAAGAAACTTCTGGAAGTTTT 2618
Query 2541 GTTAAGATACGACTGTGTTCTCCTGGTATGACTCTATCTAGACCAGATAACAAAGTTAAT 2600
|| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2619 TTTGAGTTACGACTGTGTTCTCCTGGTATGACTCGAGCTAGACCAGATAACAAAGTTAAT 2678
Query 2601 ACAAGTGCGGAAGATCTATCAAACCAGCACAAAAGATCATTTGGTGATATTCCAACCGAA 2660
|||||||| |||||||||||||||||||||||| |||||| |||||| ||||||| |||
Sbjct 2679 GCAAGTGCGAAAGATCTATCAAACCAGCACAAAATATCATTAGGTGATTTTCCAACAGAA 2738
Query 2661 GAAATCTCATCAGAACCT-TCATGCACAGTGGACTCTATTCCTTTATCAGAAATTGATAA 2719
||||| |||||||||||| | ||||||||||||||||||||||||||| | ||| |||||
Sbjct 2739 GAAATGTCATCAGAACCTCT-ATGCACAGTGGACTCTATTCCTTTATCTGCAATCGATAA 2797
Query 2720 AACTAACACTGCAGAGACTAGCTTTGATATTGAAAACTTCAACATATTTGATGGAACTCC 2779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2798 AACTAACACTGCAGAGACCAGCTTTGATATTGAAAACTTCAACATATTTGATGGAACTCC 2857
Query 2780 GTTCAGAAAACTCCTTGATACCCCATCACCGTGGAAATCTCCTTTACTCTTTGGTACTTT 2839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2858 GTTCAGAAAACTCCTTGATACCCCATCACCTTGGAAATCTCCTTTACTCTTTGGTTCTTT 2917
Query 2840 CTTGCAAAGTCCAAAGTTGCCTCCAGAAATTACATTTGAGGATATTGGGTGTTTTATGAG 2899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2918 CTTGCAAAGTCCAAAGTTGCCTCCAGAAATCACATTTGAGGATATTGGGTGTTTTATGAG 2977
Query 2900 TCCCGGCGAGAAAAGTTATGATGCCATAGGACTGATGAAGCATTTGAGTGAACACTCAGC 2959
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2978 TCCCGGCGAGAGAAGTTATGATGCCATAGGACTGATGAAGCATTTGAGTGAACACTCAGC 3037
Query 2960 TACGGCATATGCAGATGCCTTGGAAGTTCTGGGTAATGATACACCTGAAACGATACTCAA 3019
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 3038 TACGGCATATGCAGATGCCTTGGAAGTTCTGGGTAATGACACACCTGAATCGATACTCAA 3097
Query 3020 GAAGAGACAGCTGAACAAGTCCATTCAAGGGAAAGAAAATCAGCACCAGCCTCATGATCA 3079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3098 GAAGAGACAGCTGAACAAGTCCATTCAAGGGAAAGAAAATCAGCACCAGCCTCATGATCA 3157
Query 3080 GCTTGGAAACCGATCCCAGGTGGAGTGTCGCACCTTAGACTTCAGCGATTGTGGGACACC 3139
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3158 GCTTGGGAACCGATCCCAGGTGGAGTGTCGCGCCTTAGACTTCAGCGATTGTGGGACACC 3217
Query 3140 AGGGAAAGC-AACGGTACCCTCAGCTTCTCCGGGAGGCTACTCGAGCCCATCATCTTACC 3198
||||||||| || |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 3218 AGGGAAAGCTAA-GGTACCTTCGGCTTCTCCGGGAGGCTACTCAAGCCCATCATCTTACC 3276
Query 3199 TTTTGAAGAGTTGCAGATAGTGATGGCTGGTTTTGTTCATAGAGCTCTGAAGGGACATTC 3258
|||||||||||||||||||| || || ||||||||||||||||| |||||||||| | |
Sbjct 3277 TTTTGAAGAGTTGCAGATAGAGAAGGGTGGTTTTGTTCATAGAGTTCTGAAGGGAG-T-C 3334
Query 3259 ATTCTCGCCTTCAATTTTTTGATCTCATATGTGTATGTCTTTTTTATTCCCTCTTTGTCC 3318
| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 3335 -T-C--GCCTTCAATTTTTTGATCCCATATGTGTATGTCTTTTTTATTCCCTCCTTGTCC 3390
Query 3319 AATTTTCTTGTTTCTAAttttttttAATGTGTAGATCTCACAACTCTG-A-AT-ACA--A 3373
|||||||||||||||||||||||| |||||||||||||| |||||||| | || | | |
Sbjct 3391 AATTTTCTTGTTTCTAATTTTTTTAAATGTGTAGATCTCTCAACTCTGGACATCATACCA 3450
Query 3374 TTGATTAAATAGCGGAAAAGTAACTTGTTCTCAAGAAATTAACTT-TGAACTCC 3426
|||||||||||||| |||||||||||||||||||| ||||||||| | ||||||
Sbjct 3451 TTGATTAAATAGCGAAAAAGTAACTTGTTCTCAAGTAATTAACTTGT-AACTCC 3503
Score = 80.5 bits (43), Expect = 1e-13
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 TCCGCCTCTCCATGTTTGAGTTTTGAATACctctctctctctc 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TCCGCCTCTCCATGTTTGAGTTTTGAATACCTCTCTCTCTCTC 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170517439257
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5