BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491436
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:1578720... 2447 0.0
> AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787209-15789901
FORWARD LENGTH=1624
Length=1624
Score = 2447 bits (1325), Expect = 0.0
Identities = 1524/1617 (94%), Gaps = 25/1617 (2%)
Strand=Plus/Plus
Query 1 AGAAAATGGAAACTGTGTCTCTCACTAAACCCTAGT-CCC--CTT-TCTCAAATT-TTCT 55
||||||||||||||||| ||||| ||||||||||| ||| || |||| ||| ||||
Sbjct 4 AGAAAATGGAAACTGTG--TCTCAATAAACCCTAGTACCCTTTTTCTCTCTTATTCTTCT 61
Query 56 -TC-T-CTCTTCCTC---C--TC-CTCGAGCCAGTGAACAATTATGTCGATTCCTTGTCT 106
|| | ||| ||||| | || ||||||||| ||| ||||||||||||||||||||||
Sbjct 62 ATCTTCCTCCTCCTCTATCTTTCGCTCGAGCCATTGAGCAATTATGTCGATTCCTTGTCT 121
Query 107 AACCGAAGAGACAGCCAAAACTGTTCTTCGCCAGGTGGAGTTCTACTTCAGTGATAGTAA 166
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 AACCGAAGAGACAGCCAAAACTGTTCTTCGCCAGGTGGAGTTCTATTTCAGTGATAGTAA 181
Query 167 TCTTCCAATTGATGATTTCCTCAAGAAGACGGTCACAGAGAGTGAAGATGGCTTGGTGAG 226
||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 182 TCTACCCATTGATGATTTCCTCAAGAAGACTGTTACAGAGAGCGAAGATGGCTTGGTGAG 241
Query 227 TTTGGCGTTGATTTGCTCCTTCAGTAAGATGAGAGGATATTTGAAGTTGGGCGATTCTAA 286
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 242 TTTGGCGTTGATTTGCTCCTTTAGTAAGATGAGAGGATATTTGAAGTTGGGTGATTCTAA 301
Query 287 AGGAGATGATATTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGAACCTCTTC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGGAGATGATATTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGAACCTCTTC 361
Query 347 TGCTCTCAAGATTTCAGAAGATGGGAAAAAGGTTGGTAGGAGTACTGAATTGTTGAAGCT 406
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGCTCTCAAGATTTCTGACGATGGGAAAAAGGTTGGTAGGAGTACTGAATTGTTGAAGCT 421
Query 407 GGAAGATTTGATTGAGCAACTTAATGCTAGAACAGTAGCTGCGTCACCTTTCTCCTATGA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGAAGATTTGATTGAGCAACTTAATGCTAGAACAGTAGCTGCGTCACCTTTCTCCTATGA 481
Query 467 TGTTAAAAGAGAAGATGTGGAATCCTTTTTCAGTCAGTATGGAAAGGTTAATAGTGTGAG 526
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGTTAAAAGGGAAGACGTGGAATCCTTTTTCAGTCAGTATGGAAAGGTTAATAGTGTGAG 541
Query 527 GATGCCTCGTCATGTTGCAGAGTCAAGGATATTTTCCGGTGTTGCCTTAGTTGAGTTTCC 586
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 542 GATGCCTCGTCATGTTGCAGAGTCGAGGATATTTTCTGGTGTTGCCTTGGTTGAGTTCCC 601
Query 587 TACAGAAGAGGATGCCCAGAATGTTATGAAGCAAAATTTGGTCTTTGCTGGTCAGGAGTT 646
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 TACAGAAGAGGATGCCCAGAATGTTATGAAGCAGAATTTGGTCTTTGCTGGTCAGGAGTT 661
Query 647 GGAGCTGAAACCAAAGAAAGAGTTTGATAATGAAAGGGAGAAGGATGAAGTAAAATTTGC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGAGCTGAAACCAAAGAAAGAGTTTGATAATGAAAGGGAGAAGGATGAAGTAAAATTTGC 721
Query 707 TAATTACCAACCTCAAAAGGGATCTGCAAATCAGAAGAATGGTTCTGATCACAAAAACAA 766
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TAATTACCAACCTCAGAAGGGATCTGCAAATCAGAAGAATGGTTCTGATCACAAAAACAA 781
Query 767 TTCTGATTATGAGCCAGATTATCCCAAGGGTTTGATCATTTCATTCACCTTGAAGCGCTC 826
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 782 TTCTGCTTATGAGCCAGATTATCCCAAGGGTTTGATCATTTCATTCACCCTCAAGCGTTC 841
Query 827 AGCTGAAGAGGGTACCACGGAACaaaaaaaTTCTGAGGAGACAACTGATAAAACAATGGA 886
||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 842 AGCTGAAGAGGGTACCACGGAACAAAAAAGTTCTGAGGAGCCAACTGATAAGACAATGGA 901
Query 887 TGAAAGTGAATCAAAGCCAGCAGATACTCCTGATGCTGATAAAGAAAACACTGATGAAGT 946
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 902 AGAAAGTGAAACAAAGCCAGCAGATACTCCTGATGCTGATAAAGAAAACACTGGTGAGGT 961
Query 947 TCAGGCCCAGGGAGCAGAGGATGAAGATGATGAGAAAGAAGAAAAGGGTGCTCTAGCTAC 1006
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 TCAGGCCGAGGGAGCAGAGGATGAAGATGATGAGAAAGAAGAAAAGGGTGCTCTAGCCAC 1021
Query 1007 CCATAAAGATAATAAAGATGTTGTCTTACGCGAAGATCTTAAGGCTGTTTTCGGAAAATT 1066
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1022 CCATAAAGATAATAAGGATGTTGTCTTACGTGAAGATCTTAAGGCTGTTTTCGGAAAATT 1081
Query 1067 TGGTGATGTCAAGTTTGTGGATTTCAAGATGGGATCTGAGACGGGTTACCTTAGGTTTGA 1126
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1082 TGGTGATGTCAAGTTTGTTGATTTCAAGATGGGATCTGAGACGGGTTATCTTAGGTTTGA 1141
Query 1127 TGAACCTGAAGCATCCCAGAAAGCGCGTGCAGCAGCAGTATTAGCCAAAGAAGGTGGACT 1186
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1142 TGAACCTGAAGCATCCCAGAAAGCCCGTGCAGCAGCAGTATTAGCCAATGAAGGTGGACT 1201
Query 1187 AGCCGTGAAGAATTTTATCGCTGTCCTAGAACCTGTTACCGGCGAAGCTGAAAAGGAGTA 1246
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1202 AGCCGTGAAGAATTTTATTGCTGTCCTAGAACCTGTTATTGGCGAAGCTGAAAAGGAGTA 1261
Query 1247 TTGGACTCTCCTTCGCAGCAAAGATAGGTTTGACAAGGGTGGCCGTGGAGGAAGGGGAGG 1306
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1262 TTGGACTCTCCTACGAAGCAAAGATCGGTTTGACAAGGGTGGCCGTGGAGGAAGGGGAGG 1321
Query 1307 AAGAAGAGGAGGGAGATTCGGGCGTAAGAGGGGATCGGATTCCCCAGGTGGTCGCTGGAA 1366
|||||||||||||||||||||| | ||||||||||| ||||| || ||||||||||||||
Sbjct 1322 AAGAAGAGGAGGGAGATTCGGGAGAAAGAGGGGATCAGATTCACCGGGTGGTCGCTGGAA 1381
Query 1367 CAAATCTCAGAAAGTGGAAGCATGAGAGCTTTCGCTCGTGACTGCTTCTGTTTTT-AATA 1425
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1382 CAAATCTCAGAAGGTGGAAGCATGAGAGATTTCGCTCGTGACTGCTTCTGTTTTTCAATA 1441
Query 1426 TATTTTCCAGTTGCAACTTTAATATT-A-T-TCTCTACTTGTGACTCTTGTGATGTTATA 1482
||||| | |||||||||||||| ||| | | | || ||| ||||||| |||||||||||
Sbjct 1442 TATTT-CTAGTTGCAACTTTAA-ATTTAATGTATCGACTGGTGACTC--GTGATGTTATA 1497
Query 1483 ACTAGAAATAGCTGCTTATTTAGCAAATTTTGGTTTAGTCATATTTGGTTTTGTTTTATT 1542
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1498 ACTAGAAATAGCTGCTTATTTGGCAAATTTTGGTTTAGTCATATTTGGTATTGTTTTGTT 1557
Query 1543 TGCGCTTTATGTGCCTTCTTATGCACATTTCTCTTTCCTTAATTATTTAAAATCGAT 1599
| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1558 TA-GCTTTATGTGCCTTCTTATGCACACATCTCTTTCCTTAATTATTTTAAATCGAT 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5