BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491439
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32690.1 | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:15765... 1068 0.0
> AT4G32690.1 | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:15765402-15767106
FORWARD LENGTH=856
Length=856
Score = 1068 bits (578), Expect = 0.0
Identities = 724/790 (92%), Gaps = 27/790 (3%)
Strand=Plus/Plus
Query 1 TTTTTAAAATTCAATTCAATCGCCCACAGTTTC-TCACCACTGCGAACCagaga-g-aga 57
||||||||||||||||||||| ||||||||||| ||| ||||||| | ||||| | | |
Sbjct 1 TTTTTAAAATTCAATTCAATCACCCACAGTTTCTTCATCACTGCG-A-GAGAGACGAAAA 58
Query 58 -c-ga-a-a-accagagagaga--gagaTGCAATCGCTGCAGGAGAAGGCATCGGTGTTG 110
| || | | | ||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 59 CCAGAGAGAGA-GAGAGAGAGAGGGAGATGCAATCGCTGCAAGATAAGGCATCGGTGTTA 117
Query 111 AGCGGCGTGGATCAGGCTGAGGCTTTTGCCATTGACGAATCCAATCTGTTCGAAAAGCTT 170
|||||||| |||||||||||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct 118 AGCGGCGTCGATCAGGCTGAGGCGTTCGCCATCGACGAGTCCAATCTGTTCGACAAGCTT 177
Query 171 GGTCTTCAGGCCTTCATCAACCTATCCACTAATTTCTACACCAGGGTATATGATGACGAA 230
||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 178 GGTCTTCAGACATTCATCAACCTATCCACCAATTTCTATACCAGGGTATATGATGACGAA 237
Query 231 GAAGAATGGTTTCGATCAATATTTTCTAACTCAAACAAAGAAGATGCTATCCAGAACCAG 290
||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 238 GAAGAATGGTTTCAATCAATATTTTCTAACTCTAACAAAGAAGATGCCATCCAAAACCAG 297
Query 291 TATGAGTTCTTCGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCA-ACGAAAAGGTCA 349
||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 298 TATGAGTTCTTTGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCAGA-GAAAAGGTCA 356
Query 350 TCCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCAGAGAGATG 409
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TCCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCTGAGAGATG 416
Query 410 GCT-GCAGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACGAGGACTCAAAAA 468
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 GCTAG-AGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACCAGGACTCAAAAA 475
Query 469 TCAAAATGATGAAGTT-TTTCAGGCACACCGCATTCTTCCTTGTGGCTGGAAACGAGCTG 527
|||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 476 TCAAAATGATGAAGTTCTTT-AGACACACCGCATTTTTCCTTGTGGCTGGAAACGAGCTG 534
Query 528 AAGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAAT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAAT 594
Query 588 AAACCAGCTGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAACTTTC-ATTCAAA 646
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 595 AAACCAGCAGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAAGTTTCCATTCAAA 654
Query 647 GTACACAAA-GATTCGA-GGAATATTGGTCTTTCCTGGGAAGCAATGTAAGAGAAATAGA 704
||||||||| ||||| | |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 655 GTACACAAAAGATTCTACGGAATATTGGTCTTTCCTGGAAAGCTATGTAAGAGAAATAGA 714
Query 705 ACTGGTCT--TAA---CTCTCATTGCGAATTTGCAATAGCACTTTTTCATTAGCTGGTCT 759
|||||||| | |||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 715 ACTGGTCTACTCTTGGCTCTCACTGCAAATTTGCAATAGCACTTTTTCATTAGATGGTCT 774
Query 760 GCCACAGAAT 769
| |||| |||
Sbjct 775 GACACAAAAT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5