BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491441
Length=2936
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32670.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 4335 0.0
> AT4G32670.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr4:15759243-15762925 REVERSE LENGTH=2945
Length=2945
Score = 4335 bits (2347), Expect = 0.0
Identities = 2759/2956 (93%), Gaps = 36/2956 (1%)
Strand=Plus/Plus
Query 1 TTGCCGCTAAAGTGAAAGTGCAGACagaagagagaaagagagagaTACAATCGAAGTTCC 60
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1 TTGCCGCTAAAGTGAAAGTGCAGACTG-A-AGAGAAAGAGAGAGATACAATCGAAGTTCC 58
Query 61 AAGGTTTCTAGTTCCCGGAAAATGGAGATTTCTCCGGCGGAAGACAAGCTCGTTGGCTCC 120
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 59 AAGGTTTCTAGTTCCCGG-AAATGGAGATTTCTCCGGCGGAAGACAAACTCGTTGGCTCC 117
Query 121 GGCGAAGCTGTTACTAC---AGAAGTATCAGACATAACA-AACAAAGCTGTAGACATTTG 176
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 118 GGCGAAGCTGTTACTACAGAAGAAGTATCAGACATAA-ATAACAAAGCTGTAGACATTTG 176
Query 177 TCGGATTTGCCAATCACCGGAGGAACCAGACAATCCGTTGAGACATCCGTGCGCGTGTCG 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 TCGGATTTGCCAATCACCGGAGGAACCAGACAATCCGTTGAGACATCCGTGCGCGTGTAG 236
Query 237 AGGCTCTCTCAAGTATATCCACTCAGATTGTCTTTTTCTCTGGCTCAATCGCCGTAAACG 296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 AGGCTCTCTCAAGTATATCCACTCAGATTGTCTTTTCCTCTGGCTCAATCGCCGTAAACG 296
Query 297 CAACCATTGCGAGATTTGCAAACATTGCTACTCAATTGTGCCGATTTATTCCGAGAACGC 356
||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||
Sbjct 297 CAACCATTGCGAGATTTGCAAACGTAGCTACTCAATTGTTCCGGTTTATTCCGAGAACGC 356
Query 357 TCCAGAGAGACTACCATGGCACGAATTCTTAATGGGATTGCTAATGAGAGCATTACGTTT 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 TCCAGAGAGACTACCATGGCACGAATTCTTGATGGGATTGCTAATGAGAGCATTACGTTT 416
Query 417 CATGAACCTGATGCTTCCTTGGGTTTTCATGATTCCTTTCAACGCATATTGCTTTTCTTT 476
|||||||||||| ||||||||| | || ||||| |||||||||||||| |||||||||||
Sbjct 417 CATGAACCTGATTCTTCCTTGGATCTTGATGATGCCTTTCAACGCATACTGCTTTTCTTT 476
Query 477 TCGTCCTTGGGACAGGGAAAGTGTGTTTGTGACCCAGACTGTTTTTGAACTGTCCTTGAA 536
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 477 TCGTCCTTGGGGCAGGGAAAGTGAGTTTGTGAACCAGACTGTTTTTGAACTGTCCTTGAG 536
Query 537 ATTTCCTGGTCTGTTTTACACTGCTCAGATAGTGTCTAGTACCACCGATATGGTTGTTCA 596
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 537 ATTTCCTGGTCTGTTTTACACTGCTCAGATAGTGTCTAGTGCCACCGAGATGGTTGTTCA 596
Query 597 AATGGAAATC-ATAAGAGTGCTTTTAAGGAGACACCCCGAGTTCTTACGTCATATGATCA 655
|||||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 597 AATGGAAA-CGATAAGAGTGCTTTTAAGGAGACACCCCGAGTTCTTGCGTCGTATGATCA 655
Query 656 TCTTAGAGAATGGTCTAAAAGATAGAGATGTTACTGGAATTGTGCTGCTGTTAGCAAATC 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCTTAGAGAATGGTCTTAAAGATAGAGATGTTACTGGAATTGTGCTGCTGTTAGCAAATC 715
Query 716 ATTTACACATTCTGTGTGACTGGTGGCATGATCAGCTCTTACACTTGCCATTTCTCCATA 775
|||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 ATTTGCAAATTCTGTGTGATTGGTGGCATGATCAGCTCTTACAGTTGCCATTTCTCCATA 775
Query 776 TCATTCAGAGGGGACCTCTTGCACTAATGTTTGTTCCTCGAAACACGCCGCTTCATCAAT 835
|| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 776 TCTTTCAAAGGGGACCTCTTGCACTAGCGTTTGTTCCTCGAAACACGCCCCTTCATCAAT 835
Query 836 TTGGAGCTATCAGAAGGtttttttCCCTTTTCAGTGACAACACTTTTGCTGTTCTTGCCA 895
||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 TTGGAGCCATCAGAAGGGTTTTTTCCCTTTTGAGTGACAACACTTTTGCTGTTCTTGCCA 895
Query 896 TCAACATCTATTGGTCTTTCTTCAACGTTCTTTTACCATTTTCGATTGGACGAGTTGTCT 955
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 896 TCAACATCTATTGGTCTTTCTTCAGGGTTCTTTTACCATTTTCGATTGGCCGAGTTGTTT 955
Query 956 TAGTTCTCCTACGTTGTTTCTCACTCGGTTGGATTGCAGAAAATGCATCTGAAGTGGCTG 1015
||||||||||||| ||| || ||| |||||||||||| ||||||||||||||| ||||||
Sbjct 956 TAGTTCTCCTACGCTGTCTCCCACACGGTTGGATTGCGGAAAATGCATCTGAAATGGCTG 1015
Query 1016 CTGGAGATATGGTTATACGCTCAGTTTTATTGGCTTTCTTTGCAAGTGTCTTTACTTTGC 1075
|||||||||||||||||||||||||||||||||||| | ||| | | ||||||||| ||
Sbjct 1016 CTGGAGATATGGTTATACGCTCAGTTTTATTGGCTTGCCTTGGAGGAGTCTTTACTATGT 1075
Query 1076 CTCGAAACACGTATCTAACAAGAGTCAGATGGTCTTCACCGTCAGTTAAGGATACATTCA 1135
||||| |||| ||||||||||| |||||| || || |||||||||||||||||||||||
Sbjct 1076 CTCGAGACACTTATCTAACAAGCGTCAGAACGTTTTTACCGTCAGTTAAGGATACATTCA 1135
Query 1136 TCTTGTGTTTTAAACTCGTTGTTCTGCCTTGGATACTTGGTTGCTGGCTAGATTTCTGCA 1195
|||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1136 TCTTGTCTTTTAAACTCGGTGTTCTGCCTTGGTTACTTGGTTGCTGGCTACATTTCTGCA 1195
Query 1196 CTTTCCATATACTAGGAAAGACAGCTTTCCACAGCGTTGAGGTTCTTTCAGACTATCCAC 1255
|||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1196 CTTTCCCTATACTGGGAAAGACAGCTTCCCACACCGTTGAGGTTCTTTCAGACTATCCAC 1255
Query 1256 TCATGGCTGTCAATCATTGGTTAATGGGAATGTTGTACTTGGTAGT-TGCTTTAAGTTGC 1314
||||||||| ||| |||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 1256 TCATGGCTGACAAACATTGGTTAATGGGAACGTTGTACTTGGTA-TCTGCTTTAAGTTGC 1314
Query 1315 ATGGAGCTTATCCAAAAGATAGTTCAGAAACGAGCCTTTTGGTATCTGCTAGATGTTGCA 1374
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 ATGGAGCTTATCCAAAAGATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCA 1374
Query 1375 GAACCAAACTACAAAATCACCAAACTCCATCTTGGTCCCATTCTCTTGGCGTTTGCTTTC 1434
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1375 GAACCAAACTACAAAGTCACCAAACTGCATCTTGGTCCCATTCTCTTGGCGTTTGCTTTG 1434
Query 1435 CATGGGGCAATGGTGGTGATTGTGCTTCACTTACCAATAAAAACAATCAGTCTCATCAGC 1494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CATGGGACAATGGTGGTGATTGTGCTTCACTTACCAATAAAAACAATCAGTCTCATCAGC 1494
Query 1495 CAGTCCTTTTTCCCTCTCCAATTTGGGGTGTACGAGGATGAGTTTGTGCTTGGCTTACTT 1554
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1495 CAGTCCTTTTTCCCTCTCCAATTTGGGGTGTACGAGGATGAGTTTGTGTTTGGCTTACTT 1554
Query 1555 GTTGCTTATACGGGCCTAATAAGCTTCGGTCCCCGGTGGTTAGCCAATTTAATTAGACCA 1614
|||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTGCTTATATGTGCCTAGTAATATTCGGTCCCCGGTGGTTAGCCAATTTAATTAGACCA 1614
Query 1615 TCCATCAGACCCATAGTTCACAAGTGGGTTATCACTATCAGTTCTTTGCTCAAGTTGAGT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCCATCAGACCCATAGTTCACAAGTGGGTTATCACTATCAGTTCTTTGCTCAAGTTGAGT 1674
Query 1675 GATTTCTTGCTTGGAGAGCCCCGAAAACACCGTGCAAATCGTAATGTGAGAGTGAGACCA 1734
|||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1675 GATTTCTTGCTTGGAGAGCCCCGAAAACACCGTGCAAATCATAAT---A---TGAGACTT 1728
Query 1735 CGGTTTCTAGTATTTGGCATAGCTGAAGGCTCTATGGTCAGTTTGTATGGATCTCAAAGT 1794
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1729 CGGTGTCTAGTATTTGGCATAGCTGAAGGCTCTATGGTCAGTTTGCATGGATCTCAAAGC 1788
Query 1795 GATACCACCTGTGAAGAGGACACAAACGACCAAAGAGATAAAAGGTTTATGCTGAGGATT 1854
||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1789 GATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAGGTTTATGGTGAGGATT 1848
Query 1855 GGATTGATGTTGGTTCTAGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCT 1914
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCT 1908
Query 1915 TTACCAATTCTAGTGGGAAGGGCGTTCTTCCACTCTATCTCTTTCTTCATGCTAAGTTTC 1974
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1909 TTACCAATTCTAGTGGGAAGGGCGTTTTTCCACTCTATCTCTTTCTTCATGCTAAGTTTC 1968
Query 1975 AGACTCAAACACGACGATCTTTGTGCTTTCTGGATTGGATTCTGTATCCTGCGAGGAATC 2034
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GGACTCAAACACGACGATCTTTGTGCTTTCTGGATTGGATTCTGTATCCTGCGAGGAATC 2028
Query 2035 TATATCATCACTTGCTTCGTCTATGATCATTTCGTGACGGGAAGAGTCC-ATTTGCTTAT 2093
||||||||||||||||| ||||||||||||||| | ||||||||| || |||||||| |
Sbjct 2029 TATATCATCACTTGCTTTGTCTATGATCATTTCATAACGGGAAGAA-CCGATTTGCTTCT 2087
Query 2094 CAACCATTTCATGATGTTCATACGGAATGTCTTGTTATTCTCCATATGGATCTCAGTCAT 2153
||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2088 CAACCATGTCCTGATGTTCATACGGAATGTCTTGTTATTCTCCATATGGATCTCTGTCAT 2147
Query 2154 ACCGGGATTGCTCGGTCTCCTTATCGACCTTATGATCATCATCCCATCACAAGTTCCGCT 2213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 ACCGGGAGTGCTCGGTCTCCTTATCGACCTTATGATCATCATCCCATCACAAGTTCCGCT 2207
Query 2214 AAACGAATCCCCAGTATATAACTTGCTCCACGATTGGTTGATCGGTGTAGTCGTCCTTCA 2273
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2208 AGGTGAATCCCCAGTATATAACTTGCTCCACGATTGGTTGATCGGTGTAGTCGTCCTACA 2267
Query 2274 CATCTGGATCTTTCTGACTATGCGCACACAGATCAACTGTTTCGCGACTGTGGTGTGGCG 2333
||||||||||||||||||||||| ||||| |||||||||||| || ||||||| |||||
Sbjct 2268 CATCTGGATCTTTCTGACTATGCTCACACGGATCAACTGTTTTGCAACTGTGGCCTGGCG 2327
Query 2334 GGAAAAGCTTCACAGAATCAGAAGCGTTGGAATCAACGGACTTCCCTTTACTTGGTTGAT 2393
|||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||| ||||
Sbjct 2328 GGAAAAGCTTCAAAGAATCAGAAGCGTTACAATCAACCGACTTCCCTTTACGTGGCTGAT 2387
Query 2394 TCGAGATGTTATTGGCTCGATCATAGTGTCTCTTTTACTCACTCTCTGCGTGCCCTACGT 2453
||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 2388 TCGAGATGTTATTGGTTCGATCATAGTGTCCCTTTTATTCACTCTCTGCGTTCCCTACGT 2447
Query 2454 GGTGGTGAACTCTCTGTTCCCAATTCTTGGATTTTCCAGTGCAGTCAACTTAACTGTTCA 2513
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2448 GGTGGTAAACTCTCTGTTCCCAATTCTTGGATTTTCCAGTGCAGTCAACTTAACCGTCCA 2507
Query 2514 GCGGTTCATTTGGCCGGCGATCCTAGTCTTTATTCCCATAGGGTTTAGTGTCACGCTCAT 2573
|||||||||||||||||||||||| | ||| || |||||| |||||||||||| ||||||
Sbjct 2508 GCGGTTCATTTGGCCGGCGATCCTTGCCTTAATCCCCATATGGTTTAGTGTCAAGCTCAT 2567
Query 2574 TCGTGATCTTATCATTTACCTTCACCAGCTGGAATTCGATAATCGATACAAAGTGGGCGA 2633
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2568 TCGTGATCTTATCCTCTACCTTCACAAGCTGGAATTCGATAATCGATACAAAGTGGGCGA 2627
Query 2634 GAGGCTGGTAGATTTCACTGACGATCTCGAGTAACAAGGACCAAAACCAATTGTTATTAA 2693
||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 2628 GAGGCTGGTCGATTTCACTGAAGATCTCGAGTAACAACGACCAAAACCAATGGTTATTAA 2687
Query 2694 TAGAGA--GTA----GTCTTCAATTATAAGCACATATATATAGTTTCTTGGTGGGTGAAA 2747
|||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2688 TAGAGAATGTACCTAGTCTTCAATTATAAGTACATATACA--GTTTCTTGGTGGGTGAAA 2745
Query 2748 ------CAGTCTTCTTCACTTAAGATT-ATGAAGAATCGAGTCCTTGGAGCATCTTCTGT 2800
||||||||||||||||||||| | ||| ||||||||||||| ||||||| ||
Sbjct 2746 GTGAAACAGTCTTCTTCACTTAAGATTGA-GAATCATCGAGTCCTTGGGGCATCTTAAGT 2804
Query 2801 TTCATAAATATGATAATGGATGGTGCAATGTCTAAATTTTGCTTATGATATGCAGTTTAT 2860
||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2805 TTCATTAATATGATAATGGATGGTGCAATGTGTAGATTTTGCTTATGATATGCAATTTAC 2864
Query 2861 ACGGTTGAATAGTTTCAAAATGTGATGTAAGTTTTTTCTTCTCAACAACACAATGTACAA 2920
||| |||| |||||||||||| ||||| ||||||| | ||||||||||||||||||||||
Sbjct 2865 ACGATTGATTAGTTTCAAAATATGATGCAAGTTTTATATTCTCAACAACACAATGTACAA 2924
Query 2921 CAGAGTTATTTTCCAG 2936
||||| ||||||||||
Sbjct 2925 CAGAGGTATTTTCCAG 2940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145935637187
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5